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medbioinf / pia

:books: :microscope: PIA - Protein Inference Algorithms
https://github.com/medbioinf/pia
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Dependencies and not existing file checks #200

Closed julianu closed 10 months ago

codecov-commenter commented 10 months ago

Codecov Report

Attention: 114 lines in your changes are missing coverage. Please review.

Comparison is base (2221c5c) 61.73% compared to head (4ec1ce5) 62.01%. Report is 54 commits behind head on main.

Files Patch % Lines
src/main/java/de/mpc/pia/PIACli.java 18.39% 63 Missing and 8 partials :warning:
src/main/java/de/mpc/pia/tools/MzIdentMLTools.java 0.00% 16 Missing :warning:
src/main/java/de/mpc/pia/JsonAnalysis.java 36.36% 7 Missing :warning:
src/main/java/de/mpc/pia/modeller/PSMModeller.java 33.33% 5 Missing and 1 partial :warning:
...ediate/compiler/parser/InputFileParserFactory.java 37.50% 4 Missing and 1 partial :warning:
.../pia/modeller/report/filter/RegisteredFilters.java 50.00% 3 Missing and 1 partial :warning:
...ermediate/compiler/parser/MzIdentMLFileParser.java 75.00% 1 Missing and 2 partials :warning:
...main/java/de/mpc/pia/modeller/PeptideModeller.java 50.00% 0 Missing and 1 partial :warning:
...main/java/de/mpc/pia/modeller/ProteinModeller.java 0.00% 0 Missing and 1 partial :warning:

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Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #200 +/- ## ============================================ + Coverage 61.73% 62.01% +0.28% - Complexity 2490 2492 +2 ============================================ Files 140 139 -1 Lines 14958 14902 -56 Branches 2641 2635 -6 ============================================ + Hits 9234 9242 +8 + Misses 4668 4601 -67 - Partials 1056 1059 +3 ``` | [Flag](https://app.codecov.io/gh/medbioinf/pia/pull/200/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/medbioinf/pia/pull/200/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None) | `62.01% <28.30%> (+0.28%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#carryforward-flags-in-the-pull-request-comment) to find out more.

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