Updating jmzIdentML and adding Comet TSV parser

[julianu]

• updating jmzIdentML to version 1.2.13, which needs change of some dependencies and setting of AddOpens to manifest
• adding parser for Comet TSV files

[codecov-commenter]

Codecov Report

Attention: 42 lines in your changes are missing coverage. Please review.

Comparison is base (c31ce5f) 62.03% compared to head (e041584) 62.29%. Report is 3 commits behind head on main.

Files	Patch %	Lines
...piler/parser/searchengines/CometTSVFileParser.java	79.05%	27 Missing and 13 partials :warning:
...ermediate/compiler/parser/MzIdentMLFileParser.java	88.23%	2 Missing :warning:

:exclamation: Your organization needs to install the Codecov GitHub app to enable full functionality.

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #203 +/- ## ============================================ + Coverage 62.03% 62.29% +0.26% - Complexity 2493 2524 +31 ============================================ Files 139 140 +1 Lines 14902 15110 +208 Branches 2635 2660 +25 ============================================ + Hits 9244 9413 +169 - Misses 4600 4627 +27 - Partials 1058 1070 +12 ``` | [Flag](https://app.codecov.io/gh/medbioinf/pia/pull/203/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/medbioinf/pia/pull/203/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None) | `62.29% <80.37%> (+0.26%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#carryforward-flags-in-the-pull-request-comment) to find out more.

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.