medema-group BiG-MAP issues

medema-group / BiG-MAP

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Interpretation of "Rnf_complex.Glycine_cleavage.succinate2propionate" MGC

#28 flashton2003 opened 3 months ago
0
ERROR: could not open "mash_sketch.msh" for reading.

#27 mmpust closed 7 months ago
2
BiG-MAP.map.py type error

#26 Lachlan1991 opened 8 months ago
0
Possible to make a release for bioconda recipe?

#25 SantaMcCloud closed 8 months ago
1
Using BiG-MAP.map.py on metatranscriptome data

#24 zbartolek opened 1 year ago
0
Hi BiG-MAP team,

#23 hildaha opened 1 year ago
1
Run BiG-MAP.map.py to see if the TPM results can be generated directly from this step

#22 zhaohanshuang opened 1 year ago
0
Running python3 BiG-MAP.family.py reports an error BiopythonParserWarning: Attempting to parse malformed locus line:

#21 zhaohanshuang opened 1 year ago
0
Make output directory if it doesn't already exist

#20 flashton2003 opened 1 year ago
0
Add one in, have to re-run BiG-MAP.map.py?

#19 flashton2003 closed 1 year ago
3
Interpreting big-map outputs

#18 flashton2003 opened 1 year ago
2
Problem with reading results into pd.dataframe during BiG-MAP.map

#17 flashton2003 opened 1 year ago
0
fastq naming pattern hard coded?

#16 flashton2003 opened 1 year ago
4
Allow usage of existing BiG-SCAPE results directory in BiG-MAP.family.py

#15 raufs closed 1 year ago
0
BiG-MAP.map.py Biom error

#14 AKBode opened 3 years ago
5
stringent protein similarity results in less clusters

#13 ZhangDengwei closed 3 years ago
1
ERROR: could not open "01.identity_0.8/mash_sketch.msh" for reading.

#12 ZhangDengwei closed 3 years ago
1
normalization to control group for log2 fold change

#11 choon-sim closed 3 years ago
1
2 errors with using BiG-MAP snakemake

#10 choon-sim closed 3 years ago
0
metagenome_contigs

#9 wisnu-adi closed 3 years ago
1
BiG-MAP.analyse- ERROR reading BIOM file

#8 ShailNair closed 3 years ago
7
Error in BiG-MAP.family.py with --metatranscriptomes option

#7 sklucas closed 3 years ago
10
SameFileError while running BiG-MAP.family.py

#6 ShailNair closed 3 years ago
2
error while running BiG-MAP.family.py:ValueError: substring not found

#5 ShailNair closed 3 years ago
3
make_sketch() missing required arguments: 'kmer' and 'sketch'

#4 snayfach opened 3 years ago
2
Readme: unclear steps for BiG-MAP.family.py

#3 edissepo closed 3 years ago
1
BiG-MAP.download.py can't download test-set: ftp site is decommissioned

#2 edissepo opened 4 years ago
1
environment dependencies (yaml-files) are not downloadable

#1 edissepo closed 3 years ago
1