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metagenlab
/
MeSS
Snakemake pipeline for simulating shotgun metagenomic samples
https://metagenlab.github.io/MeSS
MIT License
18
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2
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Add SLURM profile
#37
farchaab
closed
23 hours ago
0
Optimized unit tests
#36
farchaab
closed
2 weeks ago
0
Added error free BAMs, optimized read processing and functions
#35
farchaab
closed
2 weeks ago
0
Added rotate in input table and changed default sdm
#34
farchaab
closed
3 weeks ago
0
Add support for error-free reads with --errfree argument and separate BAM file processing
#33
teojcryan
closed
2 weeks ago
4
Error-free reads?
#32
teojcryan
closed
2 weeks ago
2
Add support for circular genomes
#31
farchaab
closed
1 month ago
0
Add accessions for hmp-template
#30
farchaab
closed
1 month ago
0
Fix duplicated contig concatenation
#29
farchaab
closed
1 month ago
0
Number of bases not enforced when tax_abundance is set?
#28
baptwr
closed
1 month ago
3
Error in rule collect_taxa_summaries
#27
teojcryan
closed
3 weeks ago
8
TypeError: cannot convert the series to <class 'int'>
#26
inspirewind
opened
1 month ago
2
Support for circular genomes?
#25
teojcryan
closed
3 weeks ago
5
Fix duplicated fasta paths
#24
farchaab
closed
2 months ago
0
Release 0.9.1
#23
farchaab
closed
2 months ago
0
CIGAR and query sequence are of different length with art_illumina
#22
farchaab
closed
2 weeks ago
0
Snakemake bug when contig header contains FASTA file name
#21
CarraraAlessia
closed
2 months ago
2
Release 0.9.0
#20
farchaab
closed
2 months ago
0
Release 0.8.3
#19
farchaab
closed
5 months ago
0
Release 0.8.2
#18
farchaab
closed
6 months ago
0
Release 0.8.0
#17
farchaab
closed
7 months ago
0
add Snaketool template
#16
farchaab
closed
11 months ago
0
Snakemake installs
#15
bjtully
closed
1 year ago
1
several errors across the execution
#14
FrAoJm
opened
1 year ago
0
KeyError in line 8 of rules/find_assemblies.rules: 'AssemblyInput'
#13
Rohit-Satyam
opened
2 years ago
1
Update for conda envs and Readme
#12
idfarbanecha
closed
2 years ago
0
updated README.md
#11
idfarbanecha
closed
3 years ago
0
Fixed checkpoints
#10
idfarbanecha
closed
3 years ago
0
updated submodule to latest
#9
idfarbanecha
closed
3 years ago
0
Enhancements
#8
idfarbanecha
closed
3 years ago
0
fixed version
#7
idfarbanecha
closed
3 years ago
0
added wrapper and setup scripts for conda packaging
#6
idfarbanecha
closed
3 years ago
0
Standard input tables for human samples
#5
cbertell
closed
7 months ago
1
Support long reads
#4
cbertell
closed
3 years ago
0
Miniconda wrapper
#3
cbertell
closed
3 years ago
0
Input % organism
#2
cbertell
closed
3 years ago
0
Input genome coverage
#1
cbertell
closed
3 years ago
0