metaspace2020 Lithops-METASPACE issues

metaspace2020 / Lithops-METASPACE

Lithops-based Serverless implementation of the METASPACE spatial metabolomics annotation pipeline

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issues

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Bump scipy from 1.5.3 to 1.10.0

#87 dependabot[bot] opened 1 year ago
0
Bump requests from 2.22.0 to 2.31.0

#86 dependabot[bot] opened 1 year ago
0
Trouble running experiment-1-typical.ipynb notebook

#85 Cohen-J-Omer opened 3 years ago
1
general fixes for vm_algorithm=False

#84 omerb01 closed 4 years ago
0
buffer_index out of range exception when running the pipeline on knative

#83 JosepSampe closed 4 years ago
2
Missing instructions for building the runtime

#82 JosepSampe opened 4 years ago
0
Fix docker executor for VM execution

#81 omerb01 closed 4 years ago
0
daemonic processes are not allowed to have children

#80 gilv closed 4 years ago
0
All memory sizes - should move to configuration keys with default values

#79 gilv opened 4 years ago
0
General changes and fixes

#78 omerb01 closed 4 years ago
2
Optimizations & integration of alternate algorithms into pipeline

#77 LachlanStuart closed 4 years ago
1
Improve centroids segmentation

#76 omerb01 closed 4 years ago
5
Python 3.6 requirement

#75 gilv closed 4 years ago
3
Split DS and DB config files

#74 LachlanStuart closed 4 years ago
2
Database creation without Spark/PyWren

#73 LachlanStuart closed 4 years ago
0
Add molecular partitioning script for VM

#72 omerb01 closed 4 years ago
0
Improve Pipeline cache

#71 omerb01 closed 4 years ago
0
Improve dataset sorting script

#70 omerb01 closed 4 years ago
0
Add read_cloud_object_with_retry

#69 omerb01 closed 4 years ago
0
Alternative approach for dataset segmentation

#68 omerb01 closed 4 years ago
10
Add support in cloud objects for Pipeline

#67 omerb01 closed 4 years ago
0
General changes

#66 omerb01 closed 4 years ago
0
pipeline validation failed

#65 omerb01 closed 4 years ago
4
Make costs more accurate

#64 omerb01 closed 4 years ago
0
Parse imzML file in cloud functions

#63 LachlanStuart closed 4 years ago
1
Adding support for Knative runtime

#62 kpavel closed 4 years ago
0
Dependecies update

#61 omerb01 closed 4 years ago
0
Fixes

#60 LachlanStuart closed 4 years ago
4
Fix first level segmentation and memory optimization

#59 omerb01 closed 4 years ago
11
define_ds_segments() on huge4 issue

#58 omerb01 closed 4 years ago
2
Retry COS requests & other tweaks

#57 LachlanStuart closed 4 years ago
1
Improve status logs

#56 omerb01 closed 4 years ago
0
formula_images memory manager issue

#55 omerb01 closed 4 years ago
12
Dynamic annotate() memory

#54 omerb01 closed 4 years ago
0
JobRunner timeout during initial download

#53 LachlanStuart closed 4 years ago
4
Fix OUTATIME in read_ds_segment

#52 LachlanStuart closed 4 years ago
2
alternatives for pd.concat() in define_centr_segments()

#51 omerb01 closed 4 years ago
2
Add "huge4" dataset

#50 LachlanStuart closed 4 years ago
3
Reduce memory usage in process_centr_segment

#49 LachlanStuart closed 4 years ago
6
Add peptide databases

#48 LachlanStuart closed 4 years ago
0
Improve memory management in annotation function

#47 omerb01 closed 4 years ago
9
Fix FDR part to support in massive amount of formulas

#46 omerb01 closed 4 years ago
1
General updates and changes

#45 omerb01 closed 5 years ago
0
Add first level dataset segmentation

#44 omerb01 closed 5 years ago
0
Segment centroids in chunks

#43 omerb01 closed 5 years ago
5
are notebooks updated to the recent databases?

#42 gilv closed 4 years ago
3
Fix generated formulas indexes

#41 omerb01 closed 5 years ago
0
Add new dataset

#40 LachlanStuart closed 5 years ago
2
reduce metaspace2020 in Docker

#39 gilv closed 5 years ago
8
General changes

#38 omerb01 closed 5 years ago
5