search

metrumresearchgroup / Torsten

library of C++ functions that support applications of Stan in Pharmacometrics
BSD 3-Clause "New" or "Revised" License
52 stars 11 forks source link

[BUG] #31

Closed ghost closed 3 years ago

ghost commented 3 years ago

Hello, It is me again with the same error encountered the running “ GenTwoCptModel.stan” and “LinTwoCptModel.stan"

Hello it is me again with the same error encountered the running Semantic error in “ GenTwoCptModel.stan” and “LinTwoCptModel.stan"

'/var/folders/bd/xq4sxv9j3bl_j6rt1hggt3ch0000gn/T/Rtmpp29l70/model-31fb794415be.stan', line 106, column 7 to line 109, column 43:

104: // 1e-8, 1e-8, 1e8); 105:
106: x = generalOdeModel_rk45(twoCptModelODE, 3, ^ 107: time, amt, rate, ii, evid, cmt, addl, ss, 108: theta, biovar, tlag,

A returning function was expected but an undeclared identifier 'generalOdeModel_rk45' was supplied.

Semantic error in '/var/folders/bd/xq4sxv9j3bl_j6rt1hggt3ch0000gn/T/Rtmpp29l70/model-31fb794415be.stan', line 106, column 7 to line 109, column 43:

104: // 1e-8, 1e-8, 1e8); 105:
106: x = generalOdeModel_rk45(twoCptModelODE, 3, ^ 107: time, amt, rate, ii, evid, cmt, addl, ss, 108: theta, biovar, tlag,

A returning function was expected but an undeclared identifier 'generalOdeModel_rk45' was supplied.

make: [/var/folders/bd/xq4sxv9j3bl_j6rt1hggt3ch0000gn/T/Rtmpp29l70/model-31fb794415be.hpp] Error 1 make: [/var/folders/bd/xq4sxv9j3bl_j6rt1hggt3ch0000gn/T/Rtmpp29l70/model-31fb794415be.hpp] Error 1 Error: An error occured during compilation! See the message above for more information.

Semantic error in '/var/folders/bd/xq4sxv9j3bl_j6rt1hggt3ch0000gn/T/Rtmpp29l70/model-31fb4f99fc66.stan', line 68, column 6 to line 69, column 34:

66:    // contains the biovariability fraction and the lag time of each compartment,
67:    // and the NONMEM data.
68:    x = linOdeModel(time, amt, rate, ii, evid, cmt, addl, ss,
           ^
69:                    K, biovar, tlag);
70:    cHat = col(x, 2) ./ V1;

A returning function was expected but an undeclared identifier 'linOdeModel' was supplied.

make: *** [/var/folders/bd/xq4sxv9j3bl_j6rt1hggt3ch0000gn/T/Rtmpp29l70/model-31fb4f99fc66.hpp] Error 1

Semantic error in '/var/folders/bd/xq4sxv9j3bl_j6rt1hggt3ch0000gn/T/Rtmpp29l70/model-31fb4f99fc66.stan', line 68, column 6 to line 69, column 34:

66:    // contains the biovariability fraction and the lag time of each compartment,
67:    // and the NONMEM data.
68:    x = linOdeModel(time, amt, rate, ii, evid, cmt, addl, ss,
           ^
69:                    K, biovar, tlag);
70:    cHat = col(x, 2) ./ V1;

A returning function was expected but an undeclared identifier 'linOdeModel' was supplied.

make: *** [/var/folders/bd/xq4sxv9j3bl_j6rt1hggt3ch0000gn/T/Rtmpp29l70/model-31fb4f99fc66.hpp] Error 1 Error: An error occured during compilation! See the message above for more information.

Semantic error in '/var/folders/bd/xq4sxv9j3bl_j6rt1hggt3ch0000gn/T/Rtmpp29l70/model-31fb689b55e.stan', line 106, column 7 to line 109, column 43:

104: // 1e-8, 1e-8, 1e8); 105:
106: x = generalOdeModel_rk45(twoCptModelODE, 3, ^ 107: time, amt, rate, ii, evid, cmt, addl, ss, 108: theta, biovar, tlag,

A returning function was expected but an undeclared identifier 'generalOdeModel_rk45' was supplied.

Semantic error in '/var/folders/bd/xq4sxv9j3bl_j6rt1hggt3ch0000gn/T/Rtmpp29l70/model-31fb689b55e.stan', line 106, column 7 to line 109, column 43:

104: // 1e-8, 1e-8, 1e8); 105:
106: x = generalOdeModel_rk45(twoCptModelODE, 3, ^ 107: time, amt, rate, ii, evid, cmt, addl, ss, 108: theta, biovar, tlag,

A returning function was expected but an undeclared identifier 'generalOdeModel_rk45' was supplied.

make: [/var/folders/bd/xq4sxv9j3bl_j6rt1hggt3ch0000gn/T/Rtmpp29l70/model-31fb689b55e.hpp] Error 1 make: [/var/folders/bd/xq4sxv9j3bl_j6rt1hggt3ch0000gn/T/Rtmpp29l70/model-31fb689b55e.hpp] Error 1 Error: An error occured during compilation! See the message above for more information.

yizhang-yiz commented 3 years ago

The two models you are looking for have been updated recently and I just merged them to master. You can re-download the repo and use model https://github.com/metrumresearchgroup/Torsten/tree/master/example-models/pk2cpt_ode and https://github.com/metrumresearchgroup/Torsten/tree/master/example-models/pk3cpt_linode

ghost commented 3 years ago

I run them and both worked! Best regards.

yizhang-yiz commented 3 years ago

We're updating all the testing examples due to recent interface change. There might be other models failing to build but should be resolved soon.