Torsten is a collection of Stan functions to facilitate analysis of pharmacometric data. See the user guide for more details. A slightly outdated web version can be found at https://metrumresearchgroup.github.io/Torsten/.
Version 0.91.0
Version 0.90.0
Version 0.89
pmx_ode_bdf[_ctrl]
.Version 0.88
Added
Changed
Version 0.87
Added
MPI dynamic load balance for Torsten's population ODE integrators
pmx_integrate_ode_group_adams
pmx_integrate_ode_group_bdf
pmx_integrate_ode_group_rk45
To invoke dynamic load balance instead of default static balance for MPI, issue TORSTEN_MPI=2
in make/local
.
RATE
as parameter in pmx_solve_rk45/bdf/adams
functions.Version 0.86
Added
Torsten's ODE integrator functions
pmx_integrate_ode_adams
pmx_integrate_ode_bdf
pmx_integrate_ode_rk45
and their counterparts to solve a population/group of subjects governed by an ODE
pmx_integrate_ode_group_adams
pmx_integrate_ode_group_bdf
pmx_integrate_ode_group_rk45
pmx_solve_group_adams
pmx_solve_group_bdf
pmx_solve_group_rk45
ts
as parameter in pmx_integrate_ode_xxx
solvers.Changed
Renaming Torsten functions in previous releases, the old-new name mapping is
PKModelOneCpt
→ pmx_solve_onecpt
PKModelTwoCpt
→ pmx_solve_onecpt
linOdeModel
→ pmx_solve_linode
generalOdeModel_adams
→ pmx_solve_adams
generalOdeModel_bdf
→ pmx_solve_bdf
generalOdeModel_rk45
→ pmx_solve_rk45
mixOde1CptModel_bdf
→ pmx_solve_onecpt_bdf
mixOde1CptModel_rk45
→ pmx_solve_onecpt_rk45
mixOde2CptModel_bdf
→ pmx_solve_twocpt_bdf
mixOde2CptModel_rk45
→ pmx_solve_twocpt_rk45
Note that the new version of the above functions return the transpose of the matrix returned by the old versions, in order to improve memory efficiency. The old version are retained but will be deprecated in the future.
Version 0.85
Version 0.84
Version 0.83
Version 0.82
linOdeModel
, pMatrix is replaced by the constant rate matrix K), biovar (parameters for the biovariability), and tlag (parameters for the lag time).Version 0.81
Version 0.80a