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mfem / PyMFEM

Python wrapper for MFEM
http://mfem.org
BSD 3-Clause "New" or "Revised" License
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build with external mfem still broken #210

Open bclyons12 opened 4 months ago

bclyons12 commented 4 months ago

I saw that #208 got merged into master, but I am still unable to build PyMFEM against my own parallel MFEM installation. I am using 

python3 setup.py install --mfem-source=/Users/lyons/src/mfem_pymfem --mfem-prefix=/Users/lyons/src/mfem_pymfem/petsc_real-mac/ --with-parallel --skip-ext --metis-prefix=/Users/lyons/src/petsc/real-mac --hypre-prefix=/usr/local/Cellar/hypre/2.30.0

It gets stuck with ModuleNotFoundError: No module named 'distutils'. Full installation output attached

It appears that python can't find distutils inside of mfem/_ser. I attempted to import setuptools._distutils.__init__ from a fresh python session inside that folder and I get 

>>> import setuptools._distutils.__init__
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.12/site-packages/setuptools/__init__.py", line 13, in <module>
    from . import version as _version_module
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.12/site-packages/setuptools/version.py", line 1, in <module>
    from ._importlib import metadata
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.12/site-packages/setuptools/_importlib.py", line 45, in <module>
    import importlib.metadata as metadata  # noqa: F401
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.12/importlib/metadata/__init__.py", line 19, in <module>
    from . import _adapters, _meta
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.12/importlib/metadata/_adapters.py", line 5, in <module>
    import email.message
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.12/email/message.py", line 15, in <module>
    from email import utils
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.12/email/utils.py", line 29, in <module>
    import socket
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.12/socket.py", line 551, in <module>
    import array
  File "/Users/lyons/src/PyMFEM/mfem/_ser/array.py", line 12, in <module>
    import _array
ModuleNotFoundError: No module named '_array'

There is a mfem/_ser/__pycache__/array.cpython-312.pyc, so perhaps that cache is interfering with something?

This looks similar to #187 and #114. Possibly related to #188 and/or #205.

Environment info

bclyons12 commented 4 months ago

The same error occurs without a custom MFEM installation:

python setup.py install --with-parallel --MPICC=/usr/local/Cellar/open-mpi/5.0.2/bin/mpicc --MPICXX=/usr/local/Cellar/open-mpi/5.0.2/bin/mpicxx --mfem-branch=master
sshiraiwa commented 4 months ago

Thank you for heads-up. 3.12 removed distutiles. We needs to look into it, meantime can you use 3.11 or earlier?

bclyons12 commented 3 months ago

@sshiraiwa I downgraded to python 3.11.8 and I still have installation issues. Here's my environment and the error I get:

Environment info

calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fe_base.i
multiprocessing.pool.RemoteTraceback: 
"""
Traceback (most recent call last):
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/multiprocessing/pool.py", line 125, in worker
    result = (True, func(*args, **kwds))
                    ^^^^^^^^^^^^^^^^^^^
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/multiprocessing/pool.py", line 48, in mapstar
    return list(map(*args))
           ^^^^^^^^^^^^^^^^
  File "/Users/lyons/src/PyMFEM/setup.py", line 330, in make_call
    raise subprocess.CalledProcessError(p.returncode,
subprocess.CalledProcessError: Command '/usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem device.i' returned non-zero exit status 1.
"""

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/Users/lyons/src/PyMFEM/setup.py", line 1924, in <module>
    main()
  File "/Users/lyons/src/PyMFEM/setup.py", line 1920, in main
    run_setup()
  File "/Users/lyons/src/PyMFEM/setup.py", line 1908, in run_setup
    setup(
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/__init__.py", line 104, in setup
    return distutils.core.setup(**attrs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup
    return run_commands(dist)
           ^^^^^^^^^^^^^^^^^^
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
    dist.run_commands()
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands
    self.run_command(cmd)
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/dist.py", line 967, in run_command
    super().run_command(command)
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
    cmd_obj.run()
  File "/Users/lyons/src/PyMFEM/setup.py", line 1705, in run
    _install.run(self)
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/command/install.py", line 85, in run
    orig.install.run(self)
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/command/install.py", line 697, in run
    self.run_command('build')
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
    self.distribution.run_command(command)
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/dist.py", line 967, in run_command
    super().run_command(command)
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
    cmd_obj.run()
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/command/build.py", line 131, in run
    self.run_command(cmd_name)
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
    self.distribution.run_command(command)
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/dist.py", line 967, in run_command
    super().run_command(command)
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
    cmd_obj.run()
  File "/Users/lyons/src/PyMFEM/setup.py", line 1760, in run
    generate_wrapper()
  File "/Users/lyons/src/PyMFEM/setup.py", line 1094, in generate_wrapper
    mp_pool.map(make_call, commands)
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/multiprocessing/pool.py", line 367, in map
    return self._map_async(func, iterable, mapstar, chunksize).get()
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/multiprocessing/pool.py", line 774, in get
    raise self._value
subprocess.CalledProcessError: Command '/usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem device.i' returned non-zero exit status 1.

I also still have the same distutils error inside the mfem/_ser folder:

Lyons% python
Python 3.11.8 | packaged by conda-forge | (main, Feb 16 2024, 20:51:20) [Clang 16.0.6 ] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import setuptools._distutils.__init__
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/__init__.py", line 14, in <module>
    from . import version as _version_module
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/version.py", line 1, in <module>
    from ._importlib import metadata
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_importlib.py", line 45, in <module>
    import importlib.metadata as metadata  # noqa: F401
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/importlib/metadata/__init__.py", line 17, in <module>
    from . import _adapters, _meta
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/importlib/metadata/_adapters.py", line 3, in <module>
    import email.message
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/email/message.py", line 15, in <module>
    from email import utils
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/email/utils.py", line 29, in <module>
    import socket
  File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/socket.py", line 550, in <module>
    import array
  File "/Users/lyons/src/PyMFEM/mfem/_ser/array.py", line 12, in <module>
    import _array
ModuleNotFoundError: No module named '_array'
Full installation output ``` Lyons% python setup.py install --with-parallel --MPICC=/usr/local/Cellar/open-mpi/5.0.2/bin/mpicc --MPICXX=/usr/local/Cellar/open-mpi/5.0.2/bin/mpicxx --mfem-branch=master running install /Users/lyons/src/PyMFEM/setup.py:1597: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! _install.initialize_options(self) ext_prefix running external_install_prefix with the following parameters sys.argv : ['setup.py', 'install', '--with-parallel', '--MPICC=/usr/local/Cellar/open-mpi/5.0.2/bin/mpicc', '--MPICXX=/usr/local/Cellar/open-mpi/5.0.2/bin/mpicxx', '--mfem-branch=master'] sys.prefix : /usr/local/Caskroom/mambaforge/base usersite : /Users/lyons/.local/lib/python3.11/site-packages prefix : /usr/local/Caskroom/mambaforge/base ----configuration---- prefix /usr/local/Caskroom/mambaforge/base when needed, the dependency (mfem/hypre/metis) will be installed under /usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external build mfem : Yes build metis : Yes build hypre : Yes build libceed : No build gslib : No call SWIG wrapper generator: Yes build serial wrapper: Yes build parallel wrapper : Yes hypre prefix /usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external metis prefix /usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external c compiler : cc c++ compiler : c++ mpi-c compiler : /usr/local/Cellar/open-mpi/5.0.2/bin/mpicc mpi-c++ compiler : /usr/local/Cellar/open-mpi/5.0.2/bin/mpicxx verbose : No SWIG : /usr/local/bin/swig running build running build_py Downloading : https://github.com/mfem/tpls/raw/gh-pages/metis-5.1.0.tar.gz calling ... make config shared=1 prefix=/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external cc=cc calling ... make -j 7 /usr/local/Cellar/cmake/3.28.3/bin/cmake -S/Users/lyons/src/PyMFEM/external/metis -B/Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/Cellar/cmake/3.28.3/bin/cmake -E cmake_progress_start /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/CMakeFiles /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64//CMakeFiles/progress.marks /Library/Developer/CommandLineTools/usr/bin/make -f CMakeFiles/Makefile2 all /Library/Developer/CommandLineTools/usr/bin/make -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/depend cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64 && /usr/local/Cellar/cmake/3.28.3/bin/cmake -E cmake_depends "Unix Makefiles" /Users/lyons/src/PyMFEM/external/metis /Users/lyons/src/PyMFEM/external/metis/libmetis /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64 /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis/CMakeFiles/metis.dir/DependInfo.cmake "--color=" /Library/Developer/CommandLineTools/usr/bin/make -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/build [ 2%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/csr.c.o [ 2%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/b64.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/csr.c.o -MF CMakeFiles/metis.dir/__/GKlib/csr.c.o.d -o CMakeFiles/metis.dir/__/GKlib/csr.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/csr.c cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/b64.c.o -MF CMakeFiles/metis.dir/__/GKlib/b64.c.o.d -o CMakeFiles/metis.dir/__/GKlib/b64.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/b64.c [ 3%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/error.c.o [ 4%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/blas.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/error.c.o -MF CMakeFiles/metis.dir/__/GKlib/error.c.o.d -o CMakeFiles/metis.dir/__/GKlib/error.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/error.c cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/blas.c.o -MF CMakeFiles/metis.dir/__/GKlib/blas.c.o.d -o CMakeFiles/metis.dir/__/GKlib/blas.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/blas.c [ 5%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/evaluate.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/evaluate.c.o -MF CMakeFiles/metis.dir/__/GKlib/evaluate.c.o.d -o CMakeFiles/metis.dir/__/GKlib/evaluate.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/evaluate.c [ 7%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o [ 7%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/fs.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o -MF CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o.d -o CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/fkvkselect.c cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/fs.c.o -MF CMakeFiles/metis.dir/__/GKlib/fs.c.o.d -o CMakeFiles/metis.dir/__/GKlib/fs.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/fs.c [ 10%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/getopt.c.o [ 10%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/gkregex.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/gkregex.c.o -MF CMakeFiles/metis.dir/__/GKlib/gkregex.c.o.d -o CMakeFiles/metis.dir/__/GKlib/gkregex.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/gkregex.c cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/getopt.c.o -MF CMakeFiles/metis.dir/__/GKlib/getopt.c.o.d -o CMakeFiles/metis.dir/__/GKlib/getopt.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/getopt.c [ 12%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/graph.c.o [ 12%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/htable.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk 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/Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/io.c.o -MF CMakeFiles/metis.dir/__/GKlib/io.c.o.d -o CMakeFiles/metis.dir/__/GKlib/io.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/io.c [ 14%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/itemsets.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/itemsets.c.o -MF CMakeFiles/metis.dir/__/GKlib/itemsets.c.o.d -o CMakeFiles/metis.dir/__/GKlib/itemsets.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/itemsets.c [ 15%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/mcore.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/mcore.c.o -MF CMakeFiles/metis.dir/__/GKlib/mcore.c.o.d -o 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-I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/omp.c.o -MF CMakeFiles/metis.dir/__/GKlib/omp.c.o.d -o CMakeFiles/metis.dir/__/GKlib/omp.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/omp.c [ 19%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/pdb.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/pdb.c.o -MF CMakeFiles/metis.dir/__/GKlib/pdb.c.o.d -o CMakeFiles/metis.dir/__/GKlib/pdb.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/pdb.c [ 20%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/pqueue.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/pqueue.c.o -MF CMakeFiles/metis.dir/__/GKlib/pqueue.c.o.d -o CMakeFiles/metis.dir/__/GKlib/pqueue.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/pqueue.c [ 21%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/random.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/random.c.o -MF CMakeFiles/metis.dir/__/GKlib/random.c.o.d -o CMakeFiles/metis.dir/__/GKlib/random.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/random.c [ 22%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/rw.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/rw.c.o -MF CMakeFiles/metis.dir/__/GKlib/rw.c.o.d -o CMakeFiles/metis.dir/__/GKlib/rw.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/rw.c /Users/lyons/src/PyMFEM/external/metis/GKlib/pdb.c:168:4: warning: 'sscanf' may overflow; destination buffer in argument 3 has size 6, but the corresponding specifier may require size 7 [-Wfortify-source] linetype,&aserial,aname,&altLoc,rname,&chainid,&rserial,&icode,&x,&y,&z,&opcy,&tmpt,&element); ^ /Users/lyons/src/PyMFEM/external/metis/GKlib/pdb.c:229:4: warning: 'sscanf' may overflow; destination buffer in argument 3 has size 6, but the corresponding specifier may require size 7 [-Wfortify-source] linetype,&aserial,aname,&altLoc,rname,&chainid,&rserial,&icode,&x,&y,&z,&opcy,&tmpt,&element); ^ [ 23%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/seq.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/seq.c.o -MF CMakeFiles/metis.dir/__/GKlib/seq.c.o.d -o CMakeFiles/metis.dir/__/GKlib/seq.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/seq.c 2 warnings generated. [ 25%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/sort.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/sort.c.o -MF CMakeFiles/metis.dir/__/GKlib/sort.c.o.d -o CMakeFiles/metis.dir/__/GKlib/sort.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/sort.c [ 26%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/string.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include 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libmetis/CMakeFiles/metis.dir/__/GKlib/timers.c.o -MF CMakeFiles/metis.dir/__/GKlib/timers.c.o.d -o CMakeFiles/metis.dir/__/GKlib/timers.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/timers.c [ 28%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/tokenizer.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/tokenizer.c.o -MF CMakeFiles/metis.dir/__/GKlib/tokenizer.c.o.d -o CMakeFiles/metis.dir/__/GKlib/tokenizer.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/tokenizer.c [ 29%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/util.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/__/GKlib/util.c.o -MF CMakeFiles/metis.dir/__/GKlib/util.c.o.d -o CMakeFiles/metis.dir/__/GKlib/util.c.o -c /Users/lyons/src/PyMFEM/external/metis/GKlib/util.c [ 30%] Building C object libmetis/CMakeFiles/metis.dir/auxapi.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/auxapi.c.o -MF CMakeFiles/metis.dir/auxapi.c.o.d -o CMakeFiles/metis.dir/auxapi.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/auxapi.c [ 31%] Building C object libmetis/CMakeFiles/metis.dir/balance.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/balance.c.o -MF CMakeFiles/metis.dir/balance.c.o.d -o CMakeFiles/metis.dir/balance.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/balance.c [ 34%] Building C object libmetis/CMakeFiles/metis.dir/checkgraph.c.o [ 34%] Building C object libmetis/CMakeFiles/metis.dir/bucketsort.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/checkgraph.c.o -MF CMakeFiles/metis.dir/checkgraph.c.o.d -o CMakeFiles/metis.dir/checkgraph.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/checkgraph.c cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/bucketsort.c.o -MF CMakeFiles/metis.dir/bucketsort.c.o.d -o CMakeFiles/metis.dir/bucketsort.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/bucketsort.c /Users/lyons/src/PyMFEM/external/metis/libmetis/balance.c:23:9: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] if (iabs(ntpwgts[0]*graph->tvwgt[0]-graph->pwgts[0]) < 3*graph->tvwgt[0]/graph->nvtxs) ^ /Users/lyons/src/PyMFEM/external/metis/include/metis.h:98:25: note: expanded from macro 'iabs' #define iabs abs ^ /Users/lyons/src/PyMFEM/external/metis/libmetis/balance.c:23:9: note: use function 'fabsf' instead if 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[ 38%] Building C object libmetis/CMakeFiles/metis.dir/debug.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/debug.c.o -MF CMakeFiles/metis.dir/debug.c.o.d -o CMakeFiles/metis.dir/debug.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/debug.c [ 39%] Building C object libmetis/CMakeFiles/metis.dir/fm.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX 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/Users/lyons/src/PyMFEM/external/metis/libmetis/fortran.c [ 42%] Building C object libmetis/CMakeFiles/metis.dir/frename.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/frename.c.o -MF CMakeFiles/metis.dir/frename.c.o.d -o CMakeFiles/metis.dir/frename.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/frename.c [ 43%] Building C object libmetis/CMakeFiles/metis.dir/gklib.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/gklib.c.o -MF CMakeFiles/metis.dir/gklib.c.o.d -o CMakeFiles/metis.dir/gklib.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/gklib.c [ 44%] Building C object libmetis/CMakeFiles/metis.dir/graph.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/graph.c.o -MF CMakeFiles/metis.dir/graph.c.o.d -o CMakeFiles/metis.dir/graph.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/graph.c [ 45%] Building C object libmetis/CMakeFiles/metis.dir/initpart.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/initpart.c.o -MF CMakeFiles/metis.dir/initpart.c.o.d -o CMakeFiles/metis.dir/initpart.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/initpart.c [ 46%] Building C object libmetis/CMakeFiles/metis.dir/kmetis.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/kmetis.c.o -MF CMakeFiles/metis.dir/kmetis.c.o.d -o CMakeFiles/metis.dir/kmetis.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/kmetis.c [ 47%] Building C object libmetis/CMakeFiles/metis.dir/kwayfm.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot 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libmetis/CMakeFiles/metis.dir/mcutil.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/mcutil.c.o -MF CMakeFiles/metis.dir/mcutil.c.o.d -o CMakeFiles/metis.dir/mcutil.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/mcutil.c [ 51%] Building C object libmetis/CMakeFiles/metis.dir/mesh.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX 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/Users/lyons/src/PyMFEM/external/metis/libmetis/meshpart.c [ 53%] Building C object libmetis/CMakeFiles/metis.dir/minconn.c.o [ 54%] Building C object libmetis/CMakeFiles/metis.dir/mincover.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/minconn.c.o -MF CMakeFiles/metis.dir/minconn.c.o.d -o CMakeFiles/metis.dir/minconn.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/minconn.c cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/mincover.c.o -MF CMakeFiles/metis.dir/mincover.c.o.d -o CMakeFiles/metis.dir/mincover.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/mincover.c [ 55%] Building C object libmetis/CMakeFiles/metis.dir/mmd.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/mmd.c.o -MF CMakeFiles/metis.dir/mmd.c.o.d -o CMakeFiles/metis.dir/mmd.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/mmd.c [ 56%] Building C object libmetis/CMakeFiles/metis.dir/ometis.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/ometis.c.o -MF CMakeFiles/metis.dir/ometis.c.o.d -o CMakeFiles/metis.dir/ometis.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/ometis.c [ 57%] Building C object libmetis/CMakeFiles/metis.dir/options.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/options.c.o -MF CMakeFiles/metis.dir/options.c.o.d -o CMakeFiles/metis.dir/options.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/options.c [ 59%] Building C object libmetis/CMakeFiles/metis.dir/parmetis.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot 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libmetis/CMakeFiles/metis.dir/refine.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/refine.c.o -MF CMakeFiles/metis.dir/refine.c.o.d -o CMakeFiles/metis.dir/refine.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/refine.c [ 62%] Building C object libmetis/CMakeFiles/metis.dir/separator.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX 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/Users/lyons/src/PyMFEM/external/metis/libmetis/sfm.c [ 64%] Building C object libmetis/CMakeFiles/metis.dir/srefine.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/srefine.c.o -MF CMakeFiles/metis.dir/srefine.c.o.d -o CMakeFiles/metis.dir/srefine.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/srefine.c [ 65%] Building C object libmetis/CMakeFiles/metis.dir/stat.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/stat.c.o -MF CMakeFiles/metis.dir/stat.c.o.d -o CMakeFiles/metis.dir/stat.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/stat.c [ 67%] Building C object libmetis/CMakeFiles/metis.dir/timing.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/timing.c.o -MF CMakeFiles/metis.dir/timing.c.o.d -o CMakeFiles/metis.dir/timing.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/timing.c [ 68%] Building C object libmetis/CMakeFiles/metis.dir/util.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/util.c.o -MF CMakeFiles/metis.dir/util.c.o.d -o CMakeFiles/metis.dir/util.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/util.c [ 69%] Building C object libmetis/CMakeFiles/metis.dir/wspace.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/bin/cc -Dmetis_EXPORTS -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/libmetis/. -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -fPIC -MD -MT libmetis/CMakeFiles/metis.dir/wspace.c.o -MF CMakeFiles/metis.dir/wspace.c.o.d -o CMakeFiles/metis.dir/wspace.c.o -c /Users/lyons/src/PyMFEM/external/metis/libmetis/wspace.c [ 70%] Linking C shared library libmetis.dylib cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/libmetis && /usr/local/Cellar/cmake/3.28.3/bin/cmake -E cmake_link_script CMakeFiles/metis.dir/link.txt --verbose=1 /usr/bin/cc -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -dynamiclib -Wl,-headerpad_max_install_names -o 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73%] Building C object programs/CMakeFiles/ndmetis.dir/cmdline_ndmetis.c.o [ 73%] Building C object programs/CMakeFiles/ndmetis.dir/ndmetis.c.o [ 73%] Building C object programs/CMakeFiles/m2gmetis.dir/m2gmetis.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO=\"\" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/ndmetis.dir/cmdline_ndmetis.c.o -MF CMakeFiles/ndmetis.dir/cmdline_ndmetis.c.o.d -o CMakeFiles/ndmetis.dir/cmdline_ndmetis.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/cmdline_ndmetis.c cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO=\"\" 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programs/CMakeFiles/ndmetis.dir/ndmetis.c.o -MF CMakeFiles/ndmetis.dir/ndmetis.c.o.d -o CMakeFiles/ndmetis.dir/ndmetis.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/ndmetis.c [ 75%] Building C object programs/CMakeFiles/mpmetis.dir/mpmetis.c.o [ 76%] Building C object programs/CMakeFiles/gpmetis.dir/gpmetis.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO=\"\" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/mpmetis.dir/mpmetis.c.o -MF CMakeFiles/mpmetis.dir/mpmetis.c.o.d -o CMakeFiles/mpmetis.dir/mpmetis.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/mpmetis.c cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO=\"\" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/gpmetis.dir/gpmetis.c.o -MF CMakeFiles/gpmetis.dir/gpmetis.c.o.d -o CMakeFiles/gpmetis.dir/gpmetis.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/gpmetis.c [ 78%] Building C object programs/CMakeFiles/graphchk.dir/graphchk.c.o [ 78%] Building C object programs/CMakeFiles/cmpfillin.dir/cmpfillin.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO=\"\" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/cmpfillin.dir/cmpfillin.c.o -MF CMakeFiles/cmpfillin.dir/cmpfillin.c.o.d -o CMakeFiles/cmpfillin.dir/cmpfillin.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/cmpfillin.c cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO=\"\" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/graphchk.dir/graphchk.c.o -MF CMakeFiles/graphchk.dir/graphchk.c.o.d -o CMakeFiles/graphchk.dir/graphchk.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/graphchk.c [ 80%] Building C object programs/CMakeFiles/cmpfillin.dir/io.c.o [ 80%] Building C object programs/CMakeFiles/graphchk.dir/io.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO=\"\" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/graphchk.dir/io.c.o -MF CMakeFiles/graphchk.dir/io.c.o.d -o CMakeFiles/graphchk.dir/io.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/io.c cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO=\"\" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/cmpfillin.dir/io.c.o -MF CMakeFiles/cmpfillin.dir/io.c.o.d -o CMakeFiles/cmpfillin.dir/io.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/io.c [ 82%] Building C object programs/CMakeFiles/m2gmetis.dir/cmdline_m2gmetis.c.o [ 82%] Building C object programs/CMakeFiles/ndmetis.dir/io.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO=\"\" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/m2gmetis.dir/cmdline_m2gmetis.c.o -MF CMakeFiles/m2gmetis.dir/cmdline_m2gmetis.c.o.d -o CMakeFiles/m2gmetis.dir/cmdline_m2gmetis.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/cmdline_m2gmetis.c cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO=\"\" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/ndmetis.dir/io.c.o -MF CMakeFiles/ndmetis.dir/io.c.o.d -o CMakeFiles/ndmetis.dir/io.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/io.c [ 84%] Building C object programs/CMakeFiles/gpmetis.dir/cmdline_gpmetis.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO=\"\" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/gpmetis.dir/cmdline_gpmetis.c.o -MF CMakeFiles/gpmetis.dir/cmdline_gpmetis.c.o.d -o CMakeFiles/gpmetis.dir/cmdline_gpmetis.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/cmdline_gpmetis.c [ 85%] Building C object programs/CMakeFiles/mpmetis.dir/cmdline_mpmetis.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO=\"\" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/mpmetis.dir/cmdline_mpmetis.c.o -MF CMakeFiles/mpmetis.dir/cmdline_mpmetis.c.o.d -o CMakeFiles/mpmetis.dir/cmdline_mpmetis.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/cmdline_mpmetis.c [ 86%] Building C object programs/CMakeFiles/m2gmetis.dir/io.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO=\"\" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/m2gmetis.dir/io.c.o -MF CMakeFiles/m2gmetis.dir/io.c.o.d -o CMakeFiles/m2gmetis.dir/io.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/io.c [ 87%] Building C object programs/CMakeFiles/cmpfillin.dir/smbfactor.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO=\"\" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/cmpfillin.dir/smbfactor.c.o -MF CMakeFiles/cmpfillin.dir/smbfactor.c.o.d -o CMakeFiles/cmpfillin.dir/smbfactor.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/smbfactor.c [ 89%] Building C object programs/CMakeFiles/gpmetis.dir/io.c.o [ 89%] Building C object programs/CMakeFiles/mpmetis.dir/io.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO=\"\" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/gpmetis.dir/io.c.o -MF CMakeFiles/gpmetis.dir/io.c.o.d -o CMakeFiles/gpmetis.dir/io.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/io.c cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO=\"\" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/mpmetis.dir/io.c.o -MF CMakeFiles/mpmetis.dir/io.c.o.d -o CMakeFiles/mpmetis.dir/io.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/io.c [ 92%] Linking C executable graphchk [ 92%] Building C object programs/CMakeFiles/mpmetis.dir/stat.c.o [ 93%] Building C object programs/CMakeFiles/ndmetis.dir/smbfactor.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO=\"\" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/mpmetis.dir/stat.c.o -MF CMakeFiles/mpmetis.dir/stat.c.o.d -o CMakeFiles/mpmetis.dir/stat.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/stat.c cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/local/Cellar/cmake/3.28.3/bin/cmake -E cmake_link_script CMakeFiles/graphchk.dir/link.txt --verbose=1 cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO=\"\" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/ndmetis.dir/smbfactor.c.o -MF CMakeFiles/ndmetis.dir/smbfactor.c.o.d -o CMakeFiles/ndmetis.dir/smbfactor.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/smbfactor.c [ 94%] Linking C executable m2gmetis cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/local/Cellar/cmake/3.28.3/bin/cmake -E cmake_link_script CMakeFiles/m2gmetis.dir/link.txt --verbose=1 /usr/bin/cc -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/graphchk.dir/graphchk.c.o CMakeFiles/graphchk.dir/io.c.o -o graphchk -L/home/karypis/local/lib -Wl,-rpath,/home/karypis/local/lib ../libmetis/libmetis.dylib -lm /usr/bin/cc -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/m2gmetis.dir/m2gmetis.c.o CMakeFiles/m2gmetis.dir/cmdline_m2gmetis.c.o CMakeFiles/m2gmetis.dir/io.c.o -o m2gmetis -L/home/karypis/local/lib -Wl,-rpath,/home/karypis/local/lib ../libmetis/libmetis.dylib -lm ld: warning: search path '/home/karypis/local/lib' not found [ 95%] Linking C executable cmpfillin cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/local/Cellar/cmake/3.28.3/bin/cmake -E cmake_link_script CMakeFiles/cmpfillin.dir/link.txt --verbose=1 ld: warning: search path '/home/karypis/local/lib' not found /usr/bin/cc -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmpfillin.dir/cmpfillin.c.o CMakeFiles/cmpfillin.dir/io.c.o CMakeFiles/cmpfillin.dir/smbfactor.c.o -o cmpfillin -L/home/karypis/local/lib -Wl,-rpath,/home/karypis/local/lib ../libmetis/libmetis.dylib -lm [ 95%] Built target graphchk [ 95%] Built target m2gmetis [ 96%] Building C object programs/CMakeFiles/gpmetis.dir/stat.c.o cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/bin/cc -DSVNINFO=\"\" -I/Users/lyons/src/PyMFEM/external/metis/GKlib -I/Users/lyons/src/PyMFEM/external/metis/include -I/Users/lyons/src/PyMFEM/external/metis/programs/../libmetis -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -MD -MT programs/CMakeFiles/gpmetis.dir/stat.c.o -MF CMakeFiles/gpmetis.dir/stat.c.o.d -o CMakeFiles/gpmetis.dir/stat.c.o -c /Users/lyons/src/PyMFEM/external/metis/programs/stat.c ld: warning: search path '/home/karypis/local/lib' not found [ 97%] Linking C executable mpmetis cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/local/Cellar/cmake/3.28.3/bin/cmake -E cmake_link_script CMakeFiles/mpmetis.dir/link.txt --verbose=1 /usr/bin/cc -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/mpmetis.dir/mpmetis.c.o CMakeFiles/mpmetis.dir/cmdline_mpmetis.c.o CMakeFiles/mpmetis.dir/io.c.o CMakeFiles/mpmetis.dir/stat.c.o -o mpmetis -L/home/karypis/local/lib -Wl,-rpath,/home/karypis/local/lib ../libmetis/libmetis.dylib -lm [ 98%] Linking C executable ndmetis cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/local/Cellar/cmake/3.28.3/bin/cmake -E cmake_link_script CMakeFiles/ndmetis.dir/link.txt --verbose=1 /usr/bin/cc -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/ndmetis.dir/ndmetis.c.o CMakeFiles/ndmetis.dir/cmdline_ndmetis.c.o CMakeFiles/ndmetis.dir/io.c.o CMakeFiles/ndmetis.dir/smbfactor.c.o -o ndmetis -L/home/karypis/local/lib -Wl,-rpath,/home/karypis/local/lib ../libmetis/libmetis.dylib -lm [ 98%] Built target cmpfillin ld: warning: search path '/home/karypis/local/lib' not found ld: warning: search path '/home/karypis/local/lib' not found [ 98%] Built target mpmetis [100%] Linking C executable gpmetis cd /Users/lyons/src/PyMFEM/external/metis/build/Darwin-x86_64/programs && /usr/local/Cellar/cmake/3.28.3/bin/cmake -E cmake_link_script CMakeFiles/gpmetis.dir/link.txt --verbose=1 [100%] Built target ndmetis /usr/bin/cc -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX14.2.sdk -mmacosx-version-min=13.6 -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/gpmetis.dir/gpmetis.c.o CMakeFiles/gpmetis.dir/cmdline_gpmetis.c.o CMakeFiles/gpmetis.dir/io.c.o CMakeFiles/gpmetis.dir/stat.c.o -o gpmetis -L/home/karypis/local/lib -Wl,-rpath,/home/karypis/local/lib ../libmetis/libmetis.dylib -lm ld: warning: search 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Building CXX object miniapps/hdiv-linear-solver/CMakeFiles/darcy.dir/darcy.cpp.o [ 95%] Building CXX object miniapps/dpg/CMakeFiles/pconvection-diffusion-dpg.dir/util/pcomplexweakform.cpp.o [ 95%] Building CXX object miniapps/dpg/CMakeFiles/pacoustics-dpg.dir/util/pml.cpp.o [ 95%] Building CXX object miniapps/hdiv-linear-solver/CMakeFiles/darcy.dir/change_basis.cpp.o [ 95%] Linking CXX executable pdiffusion-dpg [ 95%] Built target pdiffusion-dpg [ 95%] Building CXX object miniapps/dpg/CMakeFiles/pacoustics-dpg.dir/util/pweakform.cpp.o [ 95%] Building CXX object miniapps/dpg/CMakeFiles/pmaxwell-dpg.dir/util/complexstaticcond.cpp.o [ 95%] Built target examples [ 95%] Building CXX object miniapps/electromagnetics/CMakeFiles/tesla.dir/tesla.cpp.o [ 95%] Building CXX object miniapps/hdiv-linear-solver/CMakeFiles/darcy.dir/discrete_divergence.cpp.o [ 95%] Linking CXX executable pconvection-diffusion-dpg [ 95%] Built target pconvection-diffusion-dpg [ 95%] Building CXX object 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darcy [ 97%] Built target darcy [ 97%] Building CXX object miniapps/electromagnetics/CMakeFiles/joule.dir/joule_solver.cpp.o [ 97%] Building CXX object miniapps/electromagnetics/CMakeFiles/maxwell.dir/maxwell_solver.cpp.o [ 97%] Linking CXX executable tesla [ 97%] Built target tesla [ 98%] Linking CXX executable volta [ 98%] Built target volta [ 98%] Linking CXX executable pmaxwell-dpg [ 98%] Built target pmaxwell-dpg [100%] Linking CXX executable joule [100%] Built target joule [100%] Linking CXX executable maxwell [100%] Built target maxwell [100%] Built target miniapps calling ... make install copying mesh data for testing ../data /usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/par updating the list of existing headers calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem lininteg.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem bilininteg.i calling ... /usr/local/Caskroom/mambaforge/base/bin/python generate_lininteg_ext.py calling ... /usr/local/Caskroom/mambaforge/base/bin/python generate_bilininteg_ext.py calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fe_pos.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem vtk.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fe_h1.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem wedge.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem blockvector.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem tmop_tools.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem socketstream.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem operators.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem error.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem complex_operator.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword 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-I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem hybridization.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fe.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem blockoperator.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem std_vectors.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem cpointers.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem tetrahedron.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem table.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem quadrilateral.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem ostream_typemap.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem hash.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fe_coll.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem transfer.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem nonlininteg.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fespace.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem qfunction.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fespacehierarchy.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem intrules.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem restriction.i calling ... /usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem fe_base.i multiprocessing.pool.RemoteTraceback: """ Traceback (most recent call last): File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/multiprocessing/pool.py", line 125, in worker result = (True, func(*args, **kwds)) ^^^^^^^^^^^^^^^^^^^ File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/multiprocessing/pool.py", line 48, in mapstar return list(map(*args)) ^^^^^^^^^^^^^^^^ File "/Users/lyons/src/PyMFEM/setup.py", line 330, in make_call raise subprocess.CalledProcessError(p.returncode, subprocess.CalledProcessError: Command '/usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem device.i' returned non-zero exit status 1. """ The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/Users/lyons/src/PyMFEM/setup.py", line 1924, in main() File "/Users/lyons/src/PyMFEM/setup.py", line 1920, in main run_setup() File "/Users/lyons/src/PyMFEM/setup.py", line 1908, in run_setup setup( File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/__init__.py", line 104, in setup return distutils.core.setup(**attrs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup return run_commands(dist) ^^^^^^^^^^^^^^^^^^ File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands dist.run_commands() File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands self.run_command(cmd) File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/dist.py", line 967, in run_command super().run_command(command) File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/Users/lyons/src/PyMFEM/setup.py", line 1705, in run _install.run(self) File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/command/install.py", line 85, in run orig.install.run(self) File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/command/install.py", line 697, in run self.run_command('build') File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command self.distribution.run_command(command) File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/dist.py", line 967, in run_command super().run_command(command) File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/command/build.py", line 131, in run self.run_command(cmd_name) File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command self.distribution.run_command(command) File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/dist.py", line 967, in run_command super().run_command(command) File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command cmd_obj.run() File "/Users/lyons/src/PyMFEM/setup.py", line 1760, in run generate_wrapper() File "/Users/lyons/src/PyMFEM/setup.py", line 1094, in generate_wrapper mp_pool.map(make_call, commands) File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/multiprocessing/pool.py", line 367, in map return self._map_async(func, iterable, mapstar, chunksize).get() ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/Caskroom/mambaforge/base/lib/python3.11/multiprocessing/pool.py", line 774, in get raise self._value subprocess.CalledProcessError: Command '/usr/local/bin/swig -Wall -c++ -python -fastproxy -olddefs -keyword -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include -I/usr/local/Caskroom/mambaforge/base/lib/python3.11/site-packages/mfem/external/ser/include/mfem -I/Users/lyons/src/PyMFEM/external/mfem device.i' returned non-zero exit status 1. ```
jandrej commented 3 months ago

I'm not very familiar with the python setup, but would proper cmake exports from mfem would alleviate such issues? Or is most of the linking/include setup for python required to be done manually?