|PyPi| |Bioconda| |Release| |Downloads| |Docker|
.. |PyPi| image:: https://img.shields.io/pypi/v/mirge3.svg?branch=master :target: https://pypi.python.org/pypi/mirge3 :alt: install with PyPi
.. |Bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/mirge3/README.html :alt: install with bioconda
.. |Release| image:: https://anaconda.org/bioconda/mirge3/badges/latest_release_date.svg
:target: https://anaconda.org/bioconda/mirge3
.. |Downloads| image:: https://anaconda.org/bioconda/mirge3/badges/downloads.svg
:target: https://anaconda.org/bioconda/mirge3/files
.. |Docker| image:: https://upload.wikimedia.org/wikipedia/commons/thumb/4/4e/Docker_%28container_engine%29_logo.svg/915px-Docker_%28container_engine%29_logo.svg.png?20161017201350
:width: 140
:target: https://quay.io/repository/biocontainers/mirge3?tab=info
:alt: install with docker
An update to Python package to perform comprehensive analysis of small RNA sequencing data, including miRNA annotation, A-to-I editing, novel miRNA detection, isomiR analysis, visualization through IGV, processing Unique Molecular Identifieres (UMI), tRF detection and producing interactive graphical output.
miRge3.0 is developed in python v3.8 and is a recent update of our previous version miRge2.0 <https://pubmed.ncbi.nlm.nih.gov/30153801>_. This build includes command line interface (CLI) and cross-platform Graphical User Interface (GUI). For more details refer to documentation link below.
Documentation <https://mirge3.readthedocs.io/en/master/>_miRge3.0 Libraries <https://mirge3.readthedocs.io/en/latest/quick_start.html#mirge3-0-libraries>_ Source code <https://github.com/mhalushka/mirge3.0/>_Frequently asked questions <https://mirge3.readthedocs.io/en/latest/faqs.html>_Report an issue <https://github.com/mhalushka/mirge3.0/issues>_Project page on PyPI <https://pypi.python.org/pypi/mirge3/>_Arun H Patil, Marc K Halushka. miRge3.0: a comprehensive microRNA and tRF sequencing analysis pipeline. NAR Genomics and Bioinformatics <https://academic.oup.com/nargab/article/3/3/lqab068/6325159>_. 2021.