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michaelschaub
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calcium-imaging-analysis
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Added ICA to parcellations + added mask for whole cortex to dict
#56
DaminK
closed
2 years ago
0
Implemeted defaults to config branch_opts
#55
Joloco109
closed
2 years ago
0
Change name of filtering step
#54
DaminK
closed
2 years ago
0
Hotfix, changed from saving hexdigests to saving bytes digests as references to other objects
#53
Joloco109
closed
2 years ago
0
Rfe
#52
DaminK
closed
2 years ago
0
Refactored save_h5/load_h5 and removed unnecessary code features.
#51
Joloco109
closed
2 years ago
0
Change resources to ressources
#50
DaminK
closed
2 years ago
1
Config rework
#49
Joloco109
closed
2 years ago
1
Config rework
#48
Joloco109
closed
2 years ago
1
Switch to proper logging functions
#47
Joloco109
closed
2 years ago
1
Nicer reruns for static configuration changes.
#46
Joloco109
closed
1 year ago
2
Remove redundant saving of DecompData objects by Features.save
#45
Joloco109
opened
2 years ago
0
Added wildcard constraints and parcellation meta files as input
#44
Joloco109
closed
2 years ago
0
Clean up
#43
Joloco109
closed
2 years ago
0
Moup and Autocovariance should support different lags
#42
DaminK
closed
2 years ago
0
max_components from config.yaml doesn't apply to anatomical?
#41
DaminK
closed
1 year ago
0
Make snakemake rerun rules where rule_conf has changed
#40
DaminK
closed
1 year ago
1
Plot rodent glass brain
#39
DaminK
closed
2 years ago
0
Remove or replace tdqm with alternative
#38
DaminK
closed
2 years ago
0
Rename parcelation to parcellation
#37
DaminK
closed
2 years ago
0
Clean up repo
#36
DaminK
closed
2 years ago
0
config check/save in decoding & ploting
#35
DaminK
opened
2 years ago
0
Test/Train Split as extra rule?
#34
DaminK
closed
2 years ago
1
3. Ploting pipeline
#33
DaminK
closed
2 years ago
0
2. Decoding pipeline
#32
DaminK
closed
2 years ago
0
Include number of components in config.yaml
#31
DaminK
closed
2 years ago
0
1. Anatomical parcellation +align brain
#30
DaminK
closed
2 years ago
0
Anatomical parcellation +align pipeline
#29
DaminK
closed
2 years ago
0
Integrate Brain Alignment into pipeline
#28
DaminK
closed
2 years ago
0
Integrate anatomical parcellation into pipeline
#27
DaminK
closed
2 years ago
0
Snakemake workflow
#26
Joloco109
closed
2 years ago
0
Feature load save
#25
Joloco109
closed
2 years ago
0
Implement feature loading/saving
#24
Joloco109
closed
2 years ago
0
Maks areas outside of anatomical parcellation with Nan
#23
DaminK
closed
2 years ago
0
Brain alignment + Anatomical Parcellation
#22
DaminK
closed
2 years ago
1
Data loading and saving
#21
Joloco109
closed
2 years ago
0
Implement LocaNMF into Pipeline
#20
Joloco109
closed
2 years ago
0
Better plotting, some restructuring and more comments/headers
#19
DaminK
closed
2 years ago
0
MOUP feature + Progressbar
#18
DaminK
closed
2 years ago
0
Features back to Components for Classifier Visualization
#17
DaminK
opened
3 years ago
0
Implement Ornstein-Uhlenbeck Generative Network Model
#16
Joloco109
closed
2 years ago
0
Implement Snakemake Workflow
#15
Joloco109
closed
2 years ago
0
Create Wiki
#14
Joloco109
closed
2 years ago
0
Fix Data save/load and maybe implement save/load for features
#13
Joloco109
closed
2 years ago
2
Implement Spatial Alignment in DecompData
#12
Joloco109
closed
2 years ago
0
Feature modularization
#11
Joloco109
closed
3 years ago
0
Implemented ConditionalData based on attribute dictionaries (+ nicer getitem)
#10
Joloco109
closed
3 years ago
0
Config file + Replace hardcoded options
#9
DaminK
closed
2 years ago
0
Feature calculation Modularization
#8
DaminK
closed
2 years ago
0
load_task_data_as_pandas_df doesn't work in jupyter notebook
#7
DaminK
closed
2 years ago
1
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