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micom-dev
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micom
Python package to study microbial communities using metabolic modeling.
https://micom-dev.github.io/micom
Apache License 2.0
82
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17
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Bump codecov/codecov-action from 4.4.1 to 4.5.0
#183
dependabot[bot]
closed
1 week ago
0
Issue: No Rendered Output When Following MICOM Documentation for Constraint-Based Modeling
#182
wtscott31
opened
1 month ago
5
saving intermediate output from "grow"
#181
zoey-rw
opened
1 month ago
1
Bump codecov/codecov-action from 4.4.0 to 4.4.1
#180
dependabot[bot]
closed
1 month ago
0
Some small fixes
#179
cdiener
closed
1 month ago
1
UnboundLocalError when running minimal_media with `summarize=False`
#178
zoey-rw
closed
1 month ago
1
Bump codecov/codecov-action from 4.3.0 to 4.3.1
#176
dependabot[bot]
closed
1 month ago
1
Bump peaceiris/actions-gh-pages from 3 to 4
#174
dependabot[bot]
closed
2 months ago
0
Bump codecov/codecov-action from 4.2.0 to 4.3.0
#173
dependabot[bot]
closed
2 months ago
0
Possible Bug in `com.knockout_taxa()`
#172
alejandrocs98
opened
2 months ago
4
[feature] Transition the phenotype associations to non-parametric tests
#171
cdiener
closed
2 months ago
0
[feature] Add new interaction analysis API
#170
cdiener
closed
2 months ago
5
Bump codecov/codecov-action from 4.1.1 to 4.2.0
#169
dependabot[bot]
closed
2 months ago
0
Bump actions/setup-python from 5.0.0 to 5.1.0
#168
dependabot[bot]
closed
3 months ago
0
Bump codecov/codecov-action from 4.1.0 to 4.1.1
#167
dependabot[bot]
closed
3 months ago
0
Switch the multiprocessing default method to spawn
#166
cdiener
closed
2 months ago
0
"build" step stalling at 99% complete
#165
zoey-rw
closed
2 months ago
4
Analyse sample growth on multiple media (multi threading)
#164
PathogeNish
opened
3 months ago
3
Bump codecov/codecov-action from 4.0.2 to 4.1.0
#163
dependabot[bot]
closed
3 months ago
0
Bump codecov/codecov-action from 4.0.1 to 4.0.2
#162
dependabot[bot]
closed
4 months ago
0
Increase the number of threads for grow for a single model
#161
PathogeNish
closed
4 months ago
2
Bump codecov/codecov-action from 3.1.5 to 4.0.1
#159
dependabot[bot]
closed
4 months ago
0
Bump codecov/codecov-action from 3.1.4 to 3.1.5
#157
dependabot[bot]
closed
5 months ago
0
Hotfix to prefix trimming code
#153
cdiener
closed
5 months ago
0
Bump actions/upload-artifact from 3 to 4
#152
dependabot[bot]
closed
6 months ago
0
Bump actions/setup-python from 4.7.1 to 5.0.0
#149
dependabot[bot]
closed
6 months ago
0
Make highs work in the CI
#146
cdiener
closed
8 months ago
0
allow unifying ranks
#145
cdiener
closed
8 months ago
1
Enable the hybrid solver as the new default
#144
cdiener
closed
6 months ago
1
Be less strict about medium setting
#143
cdiener
closed
8 months ago
1
Fix the `grow` docstring to mention the correct default strategy.
#142
cdiener
closed
8 months ago
1
Bump actions/setup-python from 4.7.0 to 4.7.1
#139
dependabot[bot]
closed
8 months ago
1
Indicate tested comparison or covariate in test output
#137
cdiener
closed
9 months ago
1
Update README.rst
#136
cdiener
closed
9 months ago
0
Bump actions/checkout from 3 to 4
#134
dependabot[bot]
closed
9 months ago
1
Support the `.sbml` extensions for SBML files
#131
cdiener
opened
10 months ago
0
Bump actions/setup-python from 4.6.1 to 4.7.0
#127
dependabot[bot]
closed
11 months ago
1
Bump actions/setup-python from 4.6.0 to 4.6.1
#124
dependabot[bot]
closed
1 year ago
1
Bump codecov/codecov-action from 3.1.3 to 3.1.4
#123
dependabot[bot]
closed
1 year ago
1
keyerror: '_gpr' when using 'load_pickle'
#121
Rotembartuv
closed
9 months ago
2
Documentation and default parameters do not match for micom.workflows.grow.grow
#120
cdiener
closed
8 months ago
1
Bump codecov/codecov-action from 3.1.2 to 3.1.3
#118
dependabot[bot]
closed
1 year ago
2
Bump actions/setup-python from 4.5.0 to 4.6.0
#117
dependabot[bot]
closed
1 year ago
2
Bump codecov/codecov-action from 3.1.1 to 3.1.2
#116
dependabot[bot]
closed
1 year ago
1
Bump actions/setup-python from 4.4.0 to 4.5.0
#111
dependabot[bot]
closed
1 year ago
1
Bump actions/setup-python from 4.3.1 to 4.4.0
#109
dependabot[bot]
closed
1 year ago
2
Bump actions/setup-python from 4.3.0 to 4.3.1
#108
dependabot[bot]
closed
1 year ago
1
Bump actions/setup-python from 4.2.0 to 4.3.0
#103
dependabot[bot]
closed
1 year ago
1
Bump codecov/codecov-action from 3.1.0 to 3.1.1
#102
dependabot[bot]
closed
1 year ago
1
Add a more permissible media completion
#101
cdiener
closed
1 year ago
1
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