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micom-dev
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micom
Python package to study microbial communities using metabolic modeling.
https://micom-dev.github.io/micom
Apache License 2.0
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Bump actions/setup-python from 4.1.0 to 4.2.0
#95
dependabot[bot]
closed
1 year ago
2
Adding coupling constraint to a coupling model
#91
Ilhem36
closed
1 year ago
0
Bump actions/setup-python from 4.0.0 to 4.1.0
#89
dependabot[bot]
closed
1 year ago
1
Bump actions/setup-python from 3.1.2 to 4.0.0
#85
dependabot[bot]
closed
2 years ago
0
Bump codecov/codecov-action from 3.0.0 to 3.1.0
#84
dependabot[bot]
closed
2 years ago
0
Bump actions/setup-python from 3.1.1 to 3.1.2
#82
dependabot[bot]
closed
2 years ago
1
Improve the Gurobi support in MICOM
#81
cdiener
closed
1 year ago
2
Bump actions/upload-artifact from 2 to 3
#79
dependabot[bot]
closed
2 years ago
0
Bump codecov/codecov-action from 2.1.0 to 3.0.0
#78
dependabot[bot]
closed
2 years ago
0
Bump actions/setup-python from 3.1.0 to 3.1.1
#77
dependabot[bot]
closed
2 years ago
0
Bump actions/setup-python from 2 to 3.1.0
#76
dependabot[bot]
closed
2 years ago
0
Error while copying model using model.copy()
#72
cdiener
opened
2 years ago
2
Bump actions/checkout from 2 to 3
#67
dependabot[bot]
closed
2 years ago
1
Bump actions/setup-python from 2 to 3
#66
dependabot[bot]
closed
2 years ago
2
Improve the warning for media metabolites with a missing transport reaction
#64
cdiener
closed
8 months ago
1
Bump codecov/codecov-action from 2.0.3 to 2.1.0
#59
dependabot[bot]
closed
2 years ago
1
Adjust active demands when loading models
#56
cdiener
closed
2 years ago
3
Bump codecov/codecov-action from 2.0.2 to 2.0.3
#54
dependabot[bot]
closed
2 years ago
1
Bump codecov/codecov-action from 1 to 2.0.2
#51
dependabot[bot]
closed
2 years ago
1
Update and fix the docs
#43
cdiener
opened
3 years ago
0
Fix #37 by allowing the user to define the compression...
#39
nigiord
closed
2 years ago
5
interpretation of plot_exchanges_per_sample default behavior
#38
mmp3
closed
3 years ago
6
Give the option to increase the compresslvl of model databases
#37
nigiord
closed
2 years ago
1
Support for GTDB taxonomy?
#36
nick-youngblut
opened
3 years ago
8
Enable OSQP support
#35
cdiener
closed
3 years ago
1
[MICOM 1.0 API] Proposed new format for fluxes
#34
cdiener
opened
3 years ago
2
optimize_all(fluxes=True) and optimize_single(fluxes=True) do not return fluxes
#33
michaelsilverstein
closed
3 years ago
6
build.py:177: FutureWarning: The default value of regex will change from True to False in a future version.
#32
mmp3
closed
3 years ago
3
"Metrics are only available for models build using a model database" when using custom SBML files
#31
mmp3
closed
3 years ago
3
Different cooperative tradeoff solutions between first and second run
#30
gzampieri
closed
3 years ago
1
Fraction variation influences "status"
#29
arianccbasile
closed
3 years ago
5
Implement more checks and help for model tables
#26
cdiener
opened
3 years ago
0
Workflows are broken with Gurobi
#24
cdiener
closed
3 years ago
1
minimal_medium() returns more reactions than initially present
#15
nigiord
closed
3 years ago
2
Mention and link where to ask questions
#14
cdiener
closed
3 years ago
1
Add basic installation instructions for QP solvers to the docs
#13
jfoldi81
closed
3 years ago
4
Error occurs when joining two models after changing their metabolite IDs
#12
wintermute221
closed
3 years ago
4
Why is cooperative_tradeoff with "fluxes=True" not feasible sometimes?
#11
cymee95
closed
3 years ago
3
Export optcom results
#10
arianccbasile
closed
3 years ago
2
exchanges not identified correctly in CarveME models
#9
arianccbasile
closed
4 years ago
14
ValueError is raised with custom reaction identifiers
#8
mostueve
closed
4 years ago
2
Should warn about mismatched IDs
#7
cdiener
opened
4 years ago
0
Question on setting import flux upper bounds
#6
krcurtis
closed
4 years ago
1
Question on units for media fluxes
#5
krcurtis
closed
5 years ago
1
Issue importing
#4
arianccbasile
closed
5 years ago
3
Optimize community growth to match known relative abundance
#3
krcurtis
closed
5 years ago
5
Verbose messages from gurobi when loading community model
#2
mmundy42
closed
6 years ago
3
Why does problems.solve() return None when status is not optimal?
#1
mmundy42
closed
3 years ago
4
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