issues
search
microbiomedata
/
external-metadata-awareness
Tools for fetching and processing external schemas, ontologies and metadata records. Includes value set maintenance and some GitHub org exploration.
0
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
valueset-streamlit
#29
turbomam
opened
1 month ago
0
soil-env-medium
#28
turbomam
closed
2 months ago
0
soil-env_broad_scale
#27
turbomam
closed
2 months ago
0
better-documentation-and-cleanup
#26
turbomam
closed
2 months ago
0
some scripts still access the Biosample PostgreSQL database
#25
turbomam
opened
2 months ago
0
Separate labeling and prediction
#24
turbomam
closed
2 months ago
0
`env_package` inference
#23
turbomam
closed
2 months ago
0
infer `Biosample`'s `env_package`
#22
turbomam
opened
2 months ago
6
update external_metadata_awareness/extract_value_set_evidence.py to find semantic similarity
#21
turbomam
opened
2 months ago
1
evidence table support
#20
turbomam
closed
2 months ago
0
create script that integrates evidence for environmental context value sets
#19
turbomam
closed
2 months ago
0
`jaccard_distance` in `local/ncbi-mims-soil-biosamples-env_local_scale-annotated.tsv` doesn't look right
#18
turbomam
opened
2 months ago
0
modular makefielsa and nmdc usage counting automation
#17
turbomam
closed
2 months ago
0
modularize Makefile and automation of multiple env local scale sources
#16
turbomam
closed
2 months ago
0
how many terms to display in the submission portal per env context term
#15
aclum
opened
2 months ago
0
review on proposed subsetting for soil env_local_scale terms
#14
aclum
opened
2 months ago
1
banana plantation so specific... level out with just agricultural field
#13
turbomam
opened
2 months ago
0
review anthropogenic classes in env_local_scale for soil
#12
turbomam
opened
2 months ago
5
remove semantically similar classes from candidate lists
#11
turbomam
opened
2 months ago
0
gold targets; individual exclusions
#10
turbomam
closed
2 months ago
0
gold terms and biosamples targets
#9
turbomam
closed
2 months ago
0
prototype addition of an editable yaml file for ease of use in extracting ENVO terms via OAK for env triad permissible values
#8
sierra-moxon
opened
2 months ago
1
exclusion viz and notes
#7
turbomam
closed
2 months ago
0
Provide documentation/visualizations about `env_local_scale` exclusions
#6
turbomam
closed
2 months ago
0
#4 semsql combiner
#5
turbomam
closed
2 months ago
0
add materialized semsql combiner
#4
turbomam
closed
2 months ago
0
Use goldterms ontology as an input for prioritizing environmental context value sets
#3
turbomam
closed
2 months ago
2
Add user guide to `README.md`
#2
eecavanna
opened
2 months ago
0
load (and analyze) EBI/ENA biosample metadata specifications (checklists, etc)
#1
turbomam
opened
2 months ago
0