Open mslarae13 opened 1 year ago
I'd vote for 'Make isotope_exposure more general and enumerated to match JGI, assuming the chemical that is labeled will be captured somewhere else (chem administration?)' since it has more pros that the other option.
The NMDC slot 'isotope_exposure" can be used to inform the JGI template column "Isotope label".
In the JGI template, it's an enumeration (C13, N15, O18, Unlabeled).
NMDC doesn't have an enumeration & it is expected to include the compound that is labeled (13C glucose (C13 glucose), H218O, 15NH4+).
In theory, we can extrapolate the correct JGI enum from what we collection.. but it isn't easy, and it's error prone.
Looking for some comments / feedback on how we should handle this. @turbomam , @cmungall , @emileyfadrosh , @aclum
Some options: