migoox genome-downsampler issues

migoox / genome-downsampler

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Tests checking quality

#99 Willu12 opened 2 months ago
0
create our implementation of ortools max flow solver

#98 Willu12 opened 2 months ago
0
Add test library to the project

#97 Willu12 closed 2 months ago
0
Reaseach linear programming alternative (logical programming)

#96 Willu12 opened 2 months ago
0
improve WITH_TESTS conditional compilation

#95 mytkom opened 2 months ago
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improve WITH_TESTS compilation conditional code

#94 mytkom opened 2 months ago
0
Compilation with and without CUDA algorithms

#93 migoox closed 2 months ago
0
Compilation without and with CUDA

#92 migoox closed 2 months ago
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Update README.md after algorithm renames

#91 mytkom closed 2 months ago
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Add reads interval to reads generator

#90 migoox opened 3 months ago
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78 implement linear programming using bicgstab method

#89 Willu12 opened 3 months ago
0
Prepare efficiency tests

#88 migoox closed 3 months ago
1
Rename defines in solvers' headers

#87 mytkom closed 3 months ago
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Bugfix/77: debug CostScaling sequential algorithm

#86 mytkom closed 3 months ago
0
Fixed CUDA max flow algorithm

#85 migoox closed 3 months ago
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When running program without parameters, usage should be printed

#84 migoox opened 3 months ago
1
Added quality to the reads generators

#83 migoox closed 3 months ago
0
Removed boost, added installation tutorial

#82 migoox closed 3 months ago
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Raport

#81 migoox closed 3 months ago
1
Feature/72: add test command and refactor tests add tests for other implementations

#80 mytkom closed 3 months ago
0
Add quality to generator

#79 Willu12 closed 3 months ago
0
Implement linear programming using BiCGSTAB method

#78 Willu12 closed 2 months ago
0
Debug costscaling sequential algorithm

#77 Willu12 closed 3 months ago
0
Research and add AIO BamApi based on samtools -@ <thread_count> argument

#76 mytkom closed 3 months ago
0
Feature/71: BamApi refactor and filtering out non single amplicon pairs if .bed specified

#75 mytkom closed 3 months ago
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Tutorial, installator + readme

#74 migoox closed 3 months ago
1
Add licenses and create our license basing on them

#73 migoox closed 3 months ago
0
Add test command and refactor tests + add tests for other implementations

#72 mytkom closed 3 months ago
0
Add flag to filter out non single amplicon pairs + bam api refactor

#71 mytkom closed 3 months ago
1
changed returning array_index to returing bam_api_index in algorithm …

#70 Willu12 closed 4 months ago
0
fix algorithm output to return bam indexes

#69 Willu12 closed 4 months ago
0
Added testing utils (reads generator) and refactored code

#68 migoox closed 4 months ago
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fix/66 -create sequential max flow algorithm

#67 Willu12 closed 4 months ago
0
move virtual node to begining of nodes in sequential algorithm

#66 Willu12 opened 4 months ago
0
cuda-max-flow debugging

#65 mytkom closed 3 months ago
1
Prove the algorithm

#64 mytkom closed 3 months ago
0
test algorithms on sample data

#63 mytkom opened 4 months ago
0
prepare simple data for algorithms

#62 mytkom opened 4 months ago
0
48 - sequential max flow algorithm

#61 Willu12 closed 4 months ago
0
Max flow cuda solver

#60 migoox closed 4 months ago
0
54: Implement CLI interface

#59 mytkom closed 4 months ago
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feature/57: add filtered out reads export to separate file

#58 mytkom closed 4 months ago
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Export filtered sequences to bam

#57 mytkom closed 4 months ago
0
Add test metadata export

#56 mytkom opened 4 months ago
2
Design CLI interface

#55 mytkom closed 3 months ago
4
Implement CLI Interface

#54 mytkom closed 4 months ago
2
Implement Linear Programming solution on CUDA using cuSPARSE

#53 mytkom opened 4 months ago
1
Research library for linear programming on CUDA

#52 mytkom closed 3 months ago
1
Implement max flow on CUDA

#51 mytkom closed 4 months ago
0
Research and implement more complex quality measure

#50 mytkom opened 4 months ago
1