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mikolmogorov / maf2synteny

A tool for recovering synteny blocks from multiple alignment
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Fix a bug in `parseGff` & fix typos #3

Closed ghost closed 2 years ago

ghost commented 2 years ago
  1. A bug in parseGff: for (auto permIt : permBySeqId) The for loop should iterate by reference, otherwise the nucLength remains unchanged. The wrong sizes in "blocks_coords.txt" and coverage in "coverage_report.txt" are fixed now.
  2. Typos: e.g. << "[-m block_sizes] alignment_file\n\n" The parameter -m is inconsistence with optString = "o:s:b:h". It should be "-b".
mikolmogorov commented 2 years ago

Oups - thanks for fixing that!