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mikolmogorov / maf2synteny

A tool for recovering synteny blocks from multiple alignment
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coverage_report.txt contents #6

Closed aminakur closed 1 year ago

aminakur commented 1 year ago

What does the first part of the 'coverage_report.txt' file represent? 

10  11
11  1
8   4
9   5
7   12
6   206
5   6800
4   740
2   472
3   393
--------------------------------------------------------------------------------

I guess the second part reflects the percentage of each sequence that is covered by synteny blocks.

IR.chr08    29.3488
OM.chr03    39.2092
IR.chr11    21.1779
OM.chr05    32.8766
...
mikolmogorov commented 1 year ago

The first section is the number if synteny blocks with particular multiplicity (total copy number in all input genomes). E.g. there are 393 blocks with copy number 3, 472 blocks with copy number 2 etc. Hope this helps!