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millanek
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Dsuite
Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
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cannot plot fbranch statistics
#54
bnsacks
opened
2 years ago
12
ABBA pattern more than the BBAA pattern
#53
zhangzhiyangcs
opened
2 years ago
0
compile error on ubuntu 18.04
#52
angusdavison
closed
2 years ago
2
__main__.NewickError: Unexisting tree file or Malformed newick tree structure. You may want to check other newick loading flags like 'format' or 'quoted_node_names'.
#51
Jiangjiangzhang6
opened
2 years ago
0
Question about Dquartets
#50
CrawlingSponge
opened
2 years ago
0
unlinked SNPs from target enrichment data for Suite
#49
ambed0ya
opened
2 years ago
0
the Dsuite_fBranch.h:63:84: error: no matching function for call to ‘regex_replace(std::string&, std::regex&, const char [1])’ string treeNoBranchLengths = std::regex_replace(treeString,branchLengths,"");
#48
Jiangjiangzhang6
opened
2 years ago
2
regex issue
#47
Vicbuz
closed
2 years ago
0
mixed ploidy dataset
#46
nelidapg
opened
2 years ago
0
DtriosParallel support for new Dtrios options and multiple VCF files.
#45
feilchenfeldt
closed
2 years ago
0
Plotting fbranch z-scores
#44
RishiDeKayne
opened
3 years ago
1
pool-seq
#43
Vicbuz
closed
2 years ago
3
Compile error in Fedora34
#42
tomas-fer
opened
3 years ago
4
Specifying the labels in sets file
#41
gubrins
opened
3 years ago
0
Dsuite showing error with tree file
#40
BiodeB
opened
3 years ago
16
When running Dsuite I met a problem
#39
kuangzhuoran
opened
3 years ago
1
Floating Point exception
#38
cha04lq
opened
3 years ago
4
some question about Dtrios and Dqartets
#37
liuliuli-666
opened
3 years ago
0
missing data
#36
nicolo-tellini
closed
3 years ago
3
BBAA.txt for only 1 trio
#35
Marlappp
closed
3 years ago
2
Data filtering
#34
gubrins
opened
3 years ago
2
Mixed haploid diploid datasets
#33
tbringloe
opened
3 years ago
1
Fbranch all 0 entries using v0.4
#32
jessicarick
closed
3 years ago
3
Defining the quartets/trios
#31
XueyunF
closed
4 years ago
1
P1 and P2 are inverted across different combination.
#30
nicotel
closed
3 years ago
1
Counts don't contain info for split 1/2 of P3
#29
sstwins21
opened
4 years ago
0
ERROR: The tree string could not be parsed correctly!
#28
Chenghong412
closed
4 years ago
4
Merge pull request #4 from millanek/master
#27
feilchenfeldt
closed
4 years ago
0
No output file generated when a path included in "-n" option of "Dinvestigate"
#26
silvewheat
opened
4 years ago
1
Question about the plot of F-branch
#25
silvewheat
closed
4 years ago
2
correct output file info in DtriosParallel
#24
feilchenfeldt
closed
4 years ago
0
Update README.md
#23
ethering
closed
4 years ago
0
Error when parsing tree with Fbranch
#22
mrml500
closed
4 years ago
18
WARNING: Fewer than five blocks to calculate jackknife!!
#21
LeoYYXX
closed
4 years ago
3
DsuiteParallel and some fixes f-branch plotting
#20
feilchenfeldt
closed
4 years ago
0
The *__combine.txt file format is different from the tutorials.
#19
xiekunwhy
closed
3 years ago
3
Urgent help: Installing problem
#18
foala
closed
4 years ago
2
Can Dinvestigate sliding window by length not SNP number
#17
baozg
opened
4 years ago
3
Can not make a Dsuite
#16
SergeyNikonov
closed
4 years ago
1
Tree file creates an error
#15
MarineBio5
closed
4 years ago
3
How does it treat heterozygous sites?
#14
Hinox47
closed
4 years ago
1
Error parsing tree when using Fbranch
#13
cbrock2
closed
4 years ago
3
different results with v0.3
#12
ijulca
closed
4 years ago
2
Updated readme with plotting script description.
#11
feilchenfeldt
closed
4 years ago
0
Merge pull request #1 from millanek/master
#10
feilchenfeldt
closed
4 years ago
1
Dtools dev
#9
feilchenfeldt
closed
4 years ago
1
Update README.md
#8
feilchenfeldt
closed
4 years ago
0
How to calculate Z-score using Dtrios' output?
#7
silvewheat
closed
4 years ago
1
Dsuite: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found
#6
Yung-Chien
closed
4 years ago
2
Some problems about Dsuit
#5
sy-snake
closed
4 years ago
5
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