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mist-medical
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MIST
MIST: A simple, scalable, and end-to-end framework for 3D medical imaging segmentation.
Apache License 2.0
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11
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Add deep supervision and pocket option to all MedNeXt models.
#65
aecelaya
closed
17 hours ago
0
Update README.
#64
aecelaya
closed
2 days ago
0
Add MedNeXt implementation to MIST. Minor improvements to data loading and analyzer tools.
#63
aecelaya
closed
2 days ago
0
Update version to 0.1.4-beta.
#62
aecelaya
closed
1 week ago
0
Update data loader to use class weights to select foreground bounding box.
#61
aecelaya
closed
1 week ago
0
Minor updates to evaluation and deep supervision.
#60
aecelaya
closed
2 weeks ago
0
Change analyze to warn users of large images instead of coarsening target spacing.
#59
aecelaya
closed
3 weeks ago
0
Update version to 0.1.2b0.
#58
aecelaya
closed
3 weeks ago
0
Bug fix for bad data exclusion in analyze.py.
#57
aecelaya
closed
3 weeks ago
0
Typo in has_test_data in utils.py.
#56
aecelaya
closed
3 weeks ago
0
Bug fix in has_test_data function in utils.py.
#55
aecelaya
closed
3 weeks ago
0
Update loss functions, validation scheme, and documentation.
#54
aecelaya
closed
3 weeks ago
0
MIST version tracing
#53
fuentesdt
closed
3 weeks ago
2
Bug fixes for metrics, update readme, readability updates.
#52
aecelaya
closed
3 weeks ago
0
“single positional indexer is out-of-bounds”
#51
fuentesdt
closed
3 weeks ago
4
enable PDB for single processor runs
#50
fuentesdt
closed
3 weeks ago
0
Refactor evaluation to production-quality code. Fix bug in computing average surface distance.
#49
aecelaya
closed
1 month ago
0
Update version to 0.0.3-beta.
#48
aecelaya
closed
1 month ago
0
Improved error handling for preprocessing.
#47
aecelaya
closed
1 month ago
0
Refactor data loading and dataset conversion tools to production-quality code.
#46
aecelaya
closed
1 month ago
0
Improved target spacing computation and error handling.
#45
aecelaya
closed
1 month ago
0
Fix inference orientation bug.
#44
aecelaya
closed
1 month ago
0
Bug fixes for VAE regularization and pretrained models.
#43
aecelaya
closed
1 month ago
0
Refactor inference to production-quality code.
#42
aecelaya
closed
1 month ago
0
Update VERSION in docker-publish.yml.
#41
aecelaya
closed
1 month ago
0
Minor bug fix in docker-publish.yml.
#40
aecelaya
closed
1 month ago
0
Update publish to docker workflow.
#39
aecelaya
closed
1 month ago
0
Refactor preprocessing to production-quality code.
#38
aecelaya
closed
1 month ago
0
Crash occurs during analysis if dataset has a patient with invalid label set on most recent version
#37
evanmlim
closed
3 weeks ago
2
Add types to inputs of add_folds_to_df.
#36
aecelaya
closed
2 months ago
0
Clean up functions for creating paths CSV files.
#35
aecelaya
closed
2 months ago
0
Minor bug fixes for filtering hidden files and error handling for multiple GPUs and small datasets.
#34
aecelaya
closed
2 months ago
0
macOS .DS_Store Files are not filtered from dataset
#33
Acasteo
closed
2 months ago
1
mist_analyze to mist_inspect or mist_screen
#32
PingjunChen
opened
2 months ago
0
Crash when validation batches can't distribute evenly across all GPUs
#31
Acasteo
closed
1 month ago
1
Minor bug fix in utils
#30
aecelaya
closed
2 months ago
0
Edits for dose prediction (regression): Ensure that segmentation mask still works.
#29
doucejosy
closed
1 month ago
2
Refactor analyze_data to production quality code.
#28
aecelaya
closed
2 months ago
0
mist_train failing on last fold: IndexError: single positional indexer is out-of-bounds
#27
fuentesdt
closed
2 months ago
1
Implemented clDice in args.py and loss.py
#26
braykzmi
closed
3 months ago
4
MIST Issue
#25
CMSantos1
closed
3 months ago
9
Documentation update
#24
fuentesdt
opened
4 months ago
0
Added check for overwriting previous runs
#23
evanmlim
closed
4 months ago
5
bound box altered
#22
fuentesdt
closed
6 months ago
2
Nihils project
#21
rachelglenn
closed
6 months ago
0
Error handling for local variable referencing
#20
atwam1
closed
7 months ago
3
Update predict.py
#16
AlexBalsells
closed
10 months ago
0
Update README.md
#15
AlexBalsells
closed
10 months ago
1
ENH: need code development dir
#14
fuentesdt
closed
11 months ago
0
Incorrect args attribute in preprocess.py
#13
AlexBalsells
closed
11 months ago
0
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