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mist-medical / MIST

MIST: A simple, scalable, and end-to-end framework for 3D medical imaging segmentation.
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3d-medical-imaging-segmentation attention-unet convolutional-neural-networks deep-learning image-segmentation medical-imaging nnunet pytorch unet unetr vision-transformer

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Medical Imaging Segmentation Toolkit

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About

The Medical Imaging Segmentation Toolkit (MIST) is a simple, scalable, and end-to-end 3D medical imaging segmentation framework. MIST allows researchers to seamlessly train, evaluate, and deploy state-of-the-art deep learning models for 3D medical imaging segmentation.

Please cite the following papers if you use this code for your work:

A. Celaya et al., "PocketNet: A Smaller Neural Network For Medical Image Analysis," in IEEE Transactions on Medical Imaging, doi: 10.1109/TMI.2022.3224873.

A. Celaya et al., "FMG-Net and W-Net: Multigrid Inspired Deep Learning Architectures For Medical Imaging Segmentation," in Proceedings of LatinX in AI (LXAI) Research Workshop @ NeurIPS 2023, doi: 10.52591/lxai202312104

A. Celaya et al. "MIST: A Simple and Scalable End-To-End 3D Medical Imaging Segmentation Framework," arXiv preprint arXiv:2407.21343

Documentation

Please see our Read the Docs page here.

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