mmatschiner tutorials issues

mmatschiner / tutorials

Tutorials on phylogenetic and phylogenomic inference

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Update convert_vcf_to_nexus.rb

#21 Creeki closed 1 year ago
0
Getting a -Infinity when specifying 2 constraints instead of 1

#20 elizeng closed 1 year ago
2
Issue with executing SNAPP.xml

#19 Swap90 opened 1 year ago
1
FFT algorithm

#18 ASQWZXED closed 2 years ago
2
raise NewickError('Unexisting tree file or Malformed newick tree structure.')

#17 Jiangjiangzhang6 closed 2 years ago
6
How to prepare bed file for analysis_of_introgression_with_chromosome_length_alignments?

#16 Chenglin20170390 closed 3 years ago
2
It seems that this species is in the SETS.txt file but can't be found in the tree. Please check the spelling and completeness of your tree file.

#15 addefg closed 3 years ago
1
Do you know how to use SNAPPER?

#14 xiekunwhy closed 3 years ago
1
Why we need SNAPP to estimate divergence time?

#13 xiekunwhy closed 3 years ago
1
snapp_prep

#12 quattrinia closed 3 years ago
3
How to calculate standard deviation base on 95% HPD interval?

#11 xiekunwhy closed 3 years ago
2
stateFreq=estimate in L82 may be omitted

#10 DOieGYuan closed 3 years ago
1
ruby plot_d.rb script arguments and output

#9 vsoza closed 3 years ago
2
Updated tutorial on Dsuite

#8 millanek closed 3 years ago
0
The parameters in the result file

#7 serene66 closed 3 years ago
3
ERROR: Alignment ids have changed after mafft refinement!

#6 Yedomon closed 4 years ago
2
executing plot_d.rd script with issues

#5 dongyiyi closed 3 years ago
14
Are there any references to the testing of trios topology asymmetry?

#4 sy-snake closed 4 years ago
1
How to choose the outgroup ?

#3 liufy11 closed 5 years ago
0
convert_vcf_to_nexus does not write tab b/w species and sequence

#2 ClaudiaPaetzold closed 5 years ago
2
How to indentify the introgression region

#1 liufy11 closed 5 years ago
1