moi-taiga PathPinpointR issues

moi-taiga / PathPinpointR

A method of identifying the position of a sample upon a trajectory.

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TODO: Produde a check Action.

#43 moi-taiga opened 5 days ago
0
define reduce_counts_matrix()

#42 moi-taiga closed 5 days ago
1
Check inputs are valid for switching_times()

#41 moi-taiga opened 2 weeks ago
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`Precision` is slow.

#40 moi-taiga closed 5 days ago
1
Check that there are >0 SG

#39 moi-taiga opened 2 months ago
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Failing check in predict_position()

#38 moi-taiga opened 2 months ago
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Figures in README don't match the code.

#37 moi-taiga closed 3 weeks ago
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Slingshot not working in README

#36 moi-taiga opened 3 months ago
0
Include subset SG in `predict_position()`

#35 moi-taiga closed 5 days ago
1
Histogram of Cell's predicted positions.

#34 moi-taiga opened 4 months ago
2
Metrics may not be informative

#33 moi-taiga opened 4 months ago
0
vignette using true sample

#32 moi-taiga closed 3 weeks ago
1
Make precision plot number of switching genes.

#31 moi-taiga closed 3 weeks ago
1
Measue accuracy as a sum(innacuracy)?

#30 moi-taiga closed 4 months ago
1
TODO: Include a P-Value calculation

#29 moi-taiga closed 5 months ago
1
add sd, pvalue and zscore to ouput plot?

#28 moi-taiga opened 5 months ago
0
TODO: add a check for the inputs of zscore

#27 moi-taiga closed 5 months ago
0
zscore calculation is slow

#26 moi-taiga closed 5 months ago
0
include an ouput plot with `predict_position`?

#25 moi-taiga opened 5 months ago
0
TODO: Produce a walkthrough for using a monocle trajectory.

#24 moi-taiga opened 5 months ago
0
integrate p value, sd, and zscore into predict_positon() ?

#23 moi-taiga opened 5 months ago
2
TODO: produce a value for sd

#22 moi-taiga opened 5 months ago
2
TODO: P Value for raw ppr score.

#21 moi-taiga closed 5 months ago
1
Error from running accuracy test with a true sample is not informative

#20 moi-taiga opened 6 months ago
0
which.max chooses the first instance of Max

#19 moi-taiga closed 6 months ago
1
Quiet ppr_accuracy_test when plot=TRUE

#18 moi-taiga closed 5 months ago
1
ppr_accuracy_test only works with full reference.

#17 moi-taiga closed 5 months ago
3
warning: filter_switchgenes already run.

#16 moi-taiga opened 7 months ago
0
Precision unexpectedly produces plots.

#15 moi-taiga closed 6 months ago
1
TODO: Speed up Binarize

#14 moi-taiga opened 1 year ago
0
TODO: add true position to gss_plot_cell

#13 moi-taiga closed 1 year ago
0
select_evenly_distributed_switching_genes Reduces Accuracy

#12 moi-taiga closed 1 year ago
0
TODO: Use pseudotime for gene slection.

#11 moi-taiga closed 1 year ago
1
TODO: gss_plot_cell

#10 moi-taiga closed 1 year ago
0
TODO: Highlight GeneSwitches in final plot.

#9 moi-taiga closed 1 year ago
1
TODO: modify Y axis in racinglines_timeline

#8 moi-taiga closed 1 year ago
1
TODO: racinglines_timeline to use cell names

#7 moi-taiga closed 1 year ago
0
TODO: Handle One-Cell Samples

#6 moi-taiga closed 1 year ago
1
TODO: Plot Cells "Racing Lines".

#5 moi-taiga closed 1 year ago
0
TODO: How Accurate is GSS?

#4 moi-taiga closed 1 year ago
1
TODO: Tidy Outputs.

#3 moi-taiga closed 1 year ago
2
TODO: Add column names and rownames to racinglines output.

#2 moi-taiga closed 1 year ago
1
TOTO: create_racing_lines.R is not setup to deal with varying sizes of inputs.

#1 moi-taiga closed 5 months ago
1