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moi-taiga
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PathPinpointR
A method of identifying the position of a sample upon a trajectory.
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Check that there are >0 SG
#39
moi-taiga
opened
5 hours ago
0
Failing check in predict_position()
#38
moi-taiga
opened
2 days ago
0
Figures in README don't match the code.
#37
moi-taiga
opened
2 days ago
0
Slingshot not working in README
#36
moi-taiga
opened
3 weeks ago
0
Include subset SG in `predict_position()`
#35
moi-taiga
opened
1 month ago
0
Histogram of Cell's predicted positions.
#34
moi-taiga
opened
1 month ago
1
Metrics may not be informative
#33
moi-taiga
opened
1 month ago
0
vignette using true sample
#32
moi-taiga
opened
2 months ago
0
Make precision plot number of switching genes.
#31
moi-taiga
opened
2 months ago
0
Measue accuracy as a sum(innacuracy)?
#30
moi-taiga
closed
2 months ago
1
TODO: Include a P-Value calculation
#29
moi-taiga
closed
2 months ago
1
add sd, pvalue and zscore to ouput plot?
#28
moi-taiga
opened
2 months ago
0
TODO: add a check for the inputs of zscore
#27
moi-taiga
closed
2 months ago
0
zscore calculation is slow
#26
moi-taiga
closed
2 months ago
0
include an ouput plot with `predict_position`?
#25
moi-taiga
opened
2 months ago
0
TODO: Produce a walkthrough for using a monocle trajectory.
#24
moi-taiga
opened
3 months ago
0
integrate p value, sd, and zscore into predict_positon() ?
#23
moi-taiga
opened
3 months ago
2
TODO: produce a value for sd
#22
moi-taiga
opened
3 months ago
2
TODO: P Value for raw ppr score.
#21
moi-taiga
closed
2 months ago
1
Error from running accuracy test with a true sample is not informative
#20
moi-taiga
opened
3 months ago
0
which.max chooses the first instance of Max
#19
moi-taiga
closed
4 months ago
1
Quiet ppr_accuracy_test when plot=TRUE
#18
moi-taiga
closed
2 months ago
1
ppr_accuracy_test only works with full reference.
#17
moi-taiga
closed
2 months ago
3
warning: filter_switchgenes already run.
#16
moi-taiga
opened
4 months ago
0
Precision unexpectedly produces plots.
#15
moi-taiga
closed
4 months ago
1
TODO: Speed up Binarize
#14
moi-taiga
opened
1 year ago
0
TODO: add true position to gss_plot_cell
#13
moi-taiga
closed
1 year ago
0
select_evenly_distributed_switching_genes Reduces Accuracy
#12
moi-taiga
closed
1 year ago
0
TODO: Use pseudotime for gene slection.
#11
moi-taiga
closed
1 year ago
1
TODO: gss_plot_cell
#10
moi-taiga
closed
1 year ago
0
TODO: Highlight GeneSwitches in final plot.
#9
moi-taiga
closed
1 year ago
1
TODO: modify Y axis in racinglines_timeline
#8
moi-taiga
closed
1 year ago
1
TODO: racinglines_timeline to use cell names
#7
moi-taiga
closed
1 year ago
0
TODO: Handle One-Cell Samples
#6
moi-taiga
closed
1 year ago
1
TODO: Plot Cells "Racing Lines".
#5
moi-taiga
closed
1 year ago
0
TODO: How Accurate is GSS?
#4
moi-taiga
closed
1 year ago
1
TODO: Tidy Outputs.
#3
moi-taiga
closed
1 year ago
2
TODO: Add column names and rownames to racinglines output.
#2
moi-taiga
closed
1 year ago
1
TOTO: create_racing_lines.R is not setup to deal with varying sizes of inputs.
#1
moi-taiga
closed
2 months ago
1