mojaveazure angsd-wrapper issues

mojaveazure / angsd-wrapper

Utilities for analyzing next generation sequencing data

https://github.com/ANGSD-wrapper/angsd-wrapper

MIT License

17 stars 3 forks source link

issues

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Help with FST in Angsd-wrapper

#52 clairemerot opened 6 years ago
0
export option feature request for Shiny app

#51 devonorourke opened 7 years ago
0
Modify Thetas Shiny Graphing file loading behavior

#50 ChaochihL opened 7 years ago
0
xlim error when selecting " Toggle gff annotations"

#49 devonorourke opened 7 years ago
2
two pieces: changing delimiter for fread, and an x-lim error

#48 devonorourke closed 7 years ago
2
install using 'angsd-wrapper shiny graphing'

#47 devonorourke closed 7 years ago
5
2DSFS Fst output file mystery

#46 BrianaGross closed 7 years ago
2
Calculate SFS without reference genome

#45 vitorpavinato closed 7 years ago
1
Changed 2dsfs/fst to angsd fst

#44 tvkent closed 8 years ago
0
moved beagle output to genotypes

#43 arundurvasula closed 8 years ago
0
Fst is not up-to-date with the version of ANGSD we're using

#42 tvkent opened 8 years ago
3
saf file not interchangeable between wrappers

#41 tvkent opened 8 years ago
0
Thetas windowed analysis does not specify an output file

#40 tvkent opened 8 years ago
0
got this error running fst...

#39 tvkent closed 8 years ago
1
args

#38 tvkent closed 8 years ago
1
config sourcing order

#37 tvkent opened 8 years ago
0
shiny file names

#36 rossibarra closed 7 years ago
0
.txt vs .indF

#35 rossibarra closed 8 years ago
0
ncores

#34 rossibarra opened 8 years ago
0
pipefail fails in zsh

#33 rossibarra closed 7 years ago
8
line numbers in common_config

#32 rossibarra closed 8 years ago
1
bash_profile

#31 rossibarra closed 7 years ago
0
Example_Data/Sequences/Tripsacum_TDD39103.fai looks older than .fa

#30 johnsolk closed 7 years ago
1
Why can I only get single value of theta and Tajima's D when I tested the Example_Data?

#29 lilei1 opened 8 years ago
2
STABLE branch

#28 rossibarra closed 8 years ago
9
setup fail

#27 rossibarra closed 8 years ago
4
upgrade dependencies fails

#26 rossibarra closed 8 years ago
0
samtools dependency

#25 tvkent closed 8 years ago
2
Help.sh?

#24 tvkent closed 8 years ago
2
test.sh?

#23 tvkent closed 8 years ago
0
Consistency

#22 tvkent closed 7 years ago
1
Pull up to speed

#21 mojaveazure closed 8 years ago
0
Getting up to speed

#20 mojaveazure closed 8 years ago
0
Rplots folder documentation

#19 arundurvasula closed 8 years ago
1
another error in the tutorial

#18 lilei1 closed 8 years ago
1
correct the path in the tutorial

#17 lilei1 closed 8 years ago
1
Get this up to speed

#16 mojaveazure closed 8 years ago
0
add a paramter to define if the samples are haploid or diploid?

#15 lilei1 closed 8 years ago
1
"N_CHROM" not used

#14 lilei1 closed 8 years ago
1
A error when run "./angsd-wrapper setup data"

#13 lilei1 closed 8 years ago
0
Problems with the tutorial

#12 tvkent closed 8 years ago
3
change span of lowess

#11 rossibarra opened 8 years ago
0
Example data on figshare

#10 arundurvasula closed 8 years ago
4
Fst does not return actual base pair coordinates

#9 arundurvasula closed 8 years ago
1
Fst graphing unused argument (col = "red")

#8 arundurvasula closed 8 years ago
1
Example data in setup

#7 arundurvasula closed 8 years ago
0
Wiki link to thetas

#6 arundurvasula closed 8 years ago
1
2DSFS issue

#5 ChaochihL closed 8 years ago
2
Shiny - admix plot issue

#4 ChaochihL closed 8 years ago
3
Incorporating Arun's Shiny Graphing with Paul's angsd-wrapper scripts

#3 ChaochihL closed 8 years ago
0