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moka-guys
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automate_demultiplex
Scripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics
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Develop
#557
natashapinto
closed
1 week ago
0
V45.2.0
#556
natashapinto
closed
1 week ago
0
specify user for docker images
#555
rebeccahaines1
closed
1 week ago
0
Issue with demultiplexing for specific run folder with -r flag
#554
wintun12
opened
2 months ago
0
Move checking age of runfolder earlier to fix bug
#553
RachelDuffin
closed
4 months ago
0
Add duty_csv to automated scripts for dev runs
#552
RachelDuffin
closed
4 months ago
0
Merge pull request #546 from moka-guys/v45.1.0
#551
RachelDuffin
closed
4 months ago
0
Feature/wscleaner incorporation
#550
RachelDuffin
closed
4 months ago
0
Feature/wscleaner incorporation
#549
RachelDuffin
closed
4 months ago
0
Feature/wscleaner incorporation
#548
RachelDuffin
closed
4 months ago
0
Feature/v45.1.0
#547
RachelDuffin
closed
4 months ago
0
V45.1.0
#546
RachelDuffin
closed
4 months ago
0
Move pipelineemails into separate module - ad_email?
#545
RachelDuffin
closed
4 months ago
0
Merge master into develop
#544
RachelDuffin
closed
5 months ago
0
Update permissions
#543
RachelDuffin
closed
5 months ago
0
Fix test mode setup when on master branch
#542
RachelDuffin
closed
5 months ago
0
Fix fastq validation function and samplesheet check flag file behaviour
#541
RachelDuffin
closed
5 months ago
0
Upgrade upload agent
#540
RachelDuffin
closed
4 months ago
0
v45.0.0 - Major overhaul
#539
RachelDuffin
closed
5 months ago
0
Re add coverage back to tso postprocessing commands
#538
RachelDuffin
closed
6 months ago
0
Automate upload of development runs
#537
RachelDuffin
closed
4 months ago
0
Feature/final tweaks
#536
RachelDuffin
closed
6 months ago
0
Feature/exomedepth vcp3
#535
RachelDuffin
closed
7 months ago
0
Fix this
#534
RachelDuffin
closed
5 months ago
1
Look at usage of sys.exit(1)
#533
RachelDuffin
opened
7 months ago
0
Disable syslog in logging
#532
RachelDuffin
closed
5 months ago
1
Use tmp_path / tmp_factory_path in testing temp files
#531
RachelDuffin
opened
9 months ago
0
Remove all hardcoded paths / secrets as env variables / a configuration service
#530
RachelDuffin
opened
9 months ago
1
Remove WES and SNP
#529
RachelDuffin
opened
9 months ago
0
Do we want to send samples being processed emails to rest of teams
#528
RachelDuffin
opened
9 months ago
1
Switch hard coded paths to cmd line inputs
#527
RachelDuffin
opened
9 months ago
0
Add class to logger module that counts number of error and warning log messages
#526
RachelDuffin
closed
5 months ago
0
Develop
#525
natashapinto
closed
11 months ago
0
Feature/exomedepth vcp3
#524
natashapinto
closed
11 months ago
0
Feature/exomedepth vcp3
#523
natashapinto
closed
11 months ago
1
Add vcp3 exomedepth changes
#522
RachelDuffin
closed
11 months ago
0
Add fastq checks prior to upload
#521
RachelDuffin
closed
5 months ago
2
Bring develop in line with master
#520
RachelDuffin
closed
11 months ago
0
Add note that when this repo is updated the following repos also require update
#519
RachelDuffin
closed
5 months ago
1
Remove any emails from list and instead store in a separate configuration file on the workstation
#518
RachelDuffin
opened
1 year ago
0
CHanges required to run on Turing
#517
aledj2
closed
5 months ago
1
Implement an exponential backoff strategy for retries when uploading to DNA Nexus
#516
Graeme-Smith
opened
1 year ago
0
This should not be using append mode
#515
RachelDuffin
closed
5 months ago
1
v44.8.1
#514
rebeccahaines1
closed
1 year ago
0
add new line to congenica run commands file. Close #512
#513
rebeccahaines1
closed
1 year ago
0
newline in congenica run commands file required
#512
rebeccahaines1
closed
1 year ago
0
Merge v44.8.0 in to master
#511
rebeccahaines1
closed
1 year ago
0
Feature/exomedepth
#510
rebeccahaines1
closed
1 year ago
1
Remove SWIFT
#509
RachelDuffin
closed
5 months ago
2
Remove mokaamp
#508
RachelDuffin
closed
5 months ago
2
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