molbiodiv bcdatabaser issues

molbiodiv / bcdatabaser

A pipeline to create reference databases for arbitrary markers and taxonomic groups from NCBI data

https://bcdatabaser.molecular.eco

MIT License

6 stars 3 forks source link

issues

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Web Interface not available

#37 LasKru closed 2 years ago
4
Retry to download failed batches, Issues #16 & #31

#36 LasKru closed 3 years ago
1
Fail with long taxa-lists

#35 BWobbii closed 2 years ago
2
Geographic range

#34 BWobbii closed 3 years ago
3
how to update the taxonomy database

#33 TomaszSuchan closed 4 years ago
3
[BCdatabaser] No such file or directory

#32 janfelix closed 4 years ago
2
Issue when fetching large database

#31 JejM opened 5 years ago
3
Better selection of sequences if more than --seqs-per-taxon

#30 iimog opened 5 years ago
0
Exclude sequences containing "patent", "environmental" or "unverified"

#29 iimog closed 5 years ago
0
Increase default for --seqs-per-taxon

#28 iimog closed 5 years ago
0
Update README

#27 iimog closed 5 years ago
1
Add option to add authors when submitting to zotero

#26 iimog closed 5 years ago
1
Upload logo

#25 mirzazulfan closed 5 years ago
0
We need a logo

#24 iimog closed 5 years ago
8
Windows formatted files

#23 chiras closed 5 years ago
1
Push results to zenodo

#22 iimog closed 5 years ago
1
Add check for valid taxonomy strings

#21 iimog closed 5 years ago
0
Add call of bcdatabaser to log file

#20 iimog closed 5 years ago
0
max seq per taxon

#19 chiras closed 5 years ago
2
rename output files

#18 chiras closed 5 years ago
3
add blast-db

#17 chiras opened 5 years ago
1
Make robust against network problems

#16 iimog opened 5 years ago
0
Taxonomy Parse errors

#15 chiras opened 5 years ago
2
whoami errors

#14 chiras closed 5 years ago
5
Add option to decide whether to keep primer sequences with dispr

#13 iimog opened 6 years ago
0
Add filter and orient with HMMs

#12 iimog opened 6 years ago
2
More Metadata from NCBI

#11 iimog opened 6 years ago
0
Log summary statistics

#10 iimog closed 5 years ago
0
Combine filtered and raw sequences

#9 iimog closed 6 years ago
0
Documentation

#8 iimog closed 6 years ago
1
Add krona chart to default outputs

#7 iimog closed 6 years ago
0
Tests

#6 iimog opened 6 years ago
0
Web interface

#5 iimog closed 5 years ago
1
Wrapper to send output to zenodo

#4 iimog closed 5 years ago
2
Add option to pack output

#3 iimog closed 5 years ago
1
Citation file

#2 iimog opened 6 years ago
1
Docker

#1 iimog closed 6 years ago
0