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molgenis
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CoNVaDING
Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV) detection in high coverage next-generation sequencing (NGS) data
GNU Lesser General Public License v3.0
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error when running StartWithMatchScore step
#51
lmanchon
opened
1 year ago
0
Coverage files
#50
Tin-26
closed
1 year ago
0
Confusion regarding "StartWithMatchScore" step, inputDir vs controlsDir
#49
npatel-ah
closed
3 years ago
2
Error installing Statistics::Normality
#48
bdolmo
opened
4 years ago
1
Multi Threads
#47
SouzaBB
opened
4 years ago
1
what kind of files should be put in controlsDIr?
#46
leovam
opened
4 years ago
1
Error running convading: Incorrect BED file format, please check your BED file before processing
#45
lakhujanivijay
opened
4 years ago
9
Missing HOM_DEL and HOM_DUP in longlist
#44
sveint
opened
4 years ago
0
Update LICENSE
#43
dennishendriksen
closed
5 years ago
0
"controlsDir" not used?
#42
przemekl
opened
5 years ago
1
See commit history
#41
mmterpstra
opened
5 years ago
2
Fixed chromosome comparison in createNormalizedCoverageFiles()
#40
ryim
opened
5 years ago
3
Resolved #28
#39
creggian
opened
5 years ago
0
Chromosome name style in BED file does not correspond to naming style in BAM file
#38
Ismaelfermir
opened
6 years ago
11
Consider using mosdepth instead of samtools depth
#37
mmterpstra
opened
6 years ago
1
Check $? for execution with system or backticks
#36
mmterpstra
opened
6 years ago
0
Several improvements to CoNVaDING
#35
duartemolha
closed
6 years ago
12
Several Improvements to the CoNvading software
#34
duartemolha
closed
6 years ago
3
uninitialised values in StartWithBestScore script
#33
duartemolha
opened
6 years ago
0
unused sub targetAudit in code?
#32
duartemolha
opened
6 years ago
2
Update CoNVaDING.pl for parsing bam headers
#31
rjsicko
opened
7 years ago
0
StartWithBam - Uncaught exception
#30
rjsicko
closed
7 years ago
9
regex incorrect
#29
melferink
opened
7 years ago
0
Awk error while running CoNVaDING
#28
pradyumnasagar
opened
7 years ago
8
Updated documentation for version 1.2.1
#27
ljohansson
closed
7 years ago
0
Fixed bug introduced in previous version
#26
freerkvandijk
closed
7 years ago
0
Removed HOM del or dup part of code, contains bug which needs to be f…
#25
freerkvandijk
closed
7 years ago
0
Argument parsing warning
#24
brendanofallon
opened
7 years ago
4
Updated links to documentation in readme.md
#23
freerkvandijk
closed
7 years ago
0
Added an index column to the documentation
#22
ljohansson
closed
7 years ago
0
Added GitBook for CoNVaDING
#21
mark-de-haan
closed
7 years ago
0
Updates and fixed branch Version 1.2.0
#20
freerkvandijk
closed
7 years ago
0
Error with single-letter gene names
#19
brendanofallon
opened
7 years ago
1
Feature Request: input bam list file instead of folders
#18
duartemolha
opened
8 years ago
1
Better handling of sex chromossomes
#17
duartemolha
opened
8 years ago
2
More user friendly error handling, file not found
#16
RoanKanninga
opened
8 years ago
0
Added Test dataset
#15
ljohansson
closed
8 years ago
0
Merge documentation
#14
jjettenn
closed
8 years ago
0
Version 1.1.6 for release purpose
#13
freerkvandijk
closed
9 years ago
0
Updates on readme.html file for website
#12
freerkvandijk
closed
9 years ago
0
Fixed severe bug which lead to wrong coverage calculations
#11
freerkvandijk
closed
9 years ago
0
When running in GenerateTargetQcList mode it now emits samples which …
#10
freerkvandijk
closed
9 years ago
0
Fixed bug in less reliable targers, now 0.10 instead of 0.09 cutoff. …
#9
freerkvandijk
closed
9 years ago
0
Fixed bug which in rare cases, when there's no sample mean to calcula…
#8
freerkvandijk
closed
9 years ago
0
Added mode to generate finallist from target QC list matrix
#7
freerkvandijk
closed
9 years ago
0
small update on manual/help option/documentation
#6
freerkvandijk
closed
9 years ago
0
small update on manual/help option/documentation
#5
freerkvandijk
closed
9 years ago
0
Version 0.1.4.11
#4
freerkvandijk
closed
9 years ago
0
Updates to code
#3
freerkvandijk
closed
9 years ago
0
Beta version of CoNVaDING, 0.1.4.9
#2
freerkvandijk
closed
9 years ago
0
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