issues
search
molgenis
/
vip
Variant Interpretation Pipeline
https://molgenis.github.io/vip/
GNU Lesser General Public License v3.0
23
stars
5
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Update field metadata
#641
dennishendriksen
opened
5 hours ago
0
Feat/multiallelic
#640
bartcharbon
opened
4 days ago
0
Update capice clinvar and vkgl
#639
bartcharbon
closed
1 week ago
0
Chore/update deps
#638
bartcharbon
closed
6 days ago
0
update inheritance matcher 3.1.1
#637
bartcharbon
closed
1 month ago
0
Use <CNV:TR> instead of <STR[num]> to enable VEP annotations & fix unknown sample sex Straglr error
#636
dennishendriksen
closed
1 month ago
0
Fix #634 Sex not passed to Straglr
#635
dennishendriksen
closed
1 month ago
0
Sex not passed to Straglr
#634
dennishendriksen
closed
1 month ago
0
Fix #632 .cram not published in fastq workflow
#633
dennishendriksen
closed
2 months ago
0
`.cram` not published in fastq workflow
#632
dennishendriksen
closed
2 months ago
0
Poc/straglr
#631
bartcharbon
opened
2 months ago
0
Bump vip version to 7.9.0
#630
bartcharbon
closed
3 months ago
0
Remove DP filter from sample decision tree
#629
bartcharbon
closed
3 months ago
0
CNV calls contain N instead of the nucleotide on the reference genome
#628
bartcharbon
opened
3 months ago
0
Filter called variants by user specified bed file
#627
bartcharbon
closed
3 months ago
0
Fix GADO not working with certain hpo / proband combinations
#626
bartcharbon
closed
3 months ago
0
Add Spectre CNV calling
#625
bartcharbon
closed
3 months ago
1
`_snv.vcf.gz` not published in case of only one chunk
#624
dennishendriksen
opened
3 months ago
0
fix test.sh runner: fail on 'TIMEOUT' state
#623
dennishendriksen
closed
3 months ago
0
Bump vip report to v7.0.0 (add sample tree to report)
#622
bartcharbon
closed
3 months ago
0
Add "pcr_performed" param to disable incompatible tools
#621
bartcharbon
closed
3 months ago
0
FASTQ workflow parallelization improvements
#620
dennishendriksen
closed
3 months ago
0
update NXF_JVM_ARGS: change -Xmx250m to -Xmx512m
#619
dennishendriksen
closed
4 months ago
0
update fastq config: set 'filter_reads' cpus to 1
#618
dennishendriksen
closed
4 months ago
0
update default process values for deepvariant_call_duo/trio and coverage
#617
dennishendriksen
closed
4 months ago
0
bump vip-report 6.0.2 to 6.1.0
#616
dennishendriksen
closed
4 months ago
0
bump VEP 111.0 to 112.0
#615
dennishendriksen
opened
4 months ago
0
ClinVar metadata categorical incomplete
#614
dennishendriksen
opened
4 months ago
0
Support Nanopore adaptive sampling
#613
dennishendriksen
closed
4 months ago
0
Fix #611 DeepVariant hangs in rare cases
#612
dennishendriksen
closed
4 months ago
0
DeepVariant hangs in rare cases
#611
dennishendriksen
closed
4 months ago
0
Fix #609 Report job can run out of memory
#610
dennishendriksen
closed
4 months ago
0
Report job can run out of memory
#609
dennishendriksen
closed
4 months ago
0
bump VKGL 202402 to 202404, ClinVar 20240317 to 20240603
#608
dennishendriksen
closed
4 months ago
0
bump Nextflow 23.10.0 to 24.04.2
#607
dennishendriksen
closed
4 months ago
0
Feat/straglr150
#606
bartcharbon
closed
4 months ago
0
Produce cram coverage and read depth intermediate outputs
#605
dennishendriksen
closed
4 months ago
0
Non-deterministic consequence annotations
#604
dennishendriksen
opened
4 months ago
0
add `vkgl_vus` test
#603
dennishendriksen
closed
4 months ago
0
Green-DB annotations and usage during classification (academic use only, disabled by default)
#602
bartcharbon
closed
4 months ago
0
fix gnomAD VEP plugin: gnomAD_QC can be incorrect
#601
dennishendriksen
closed
4 months ago
0
update gnomAD v4.0 to v4.1
#600
dennishendriksen
closed
5 months ago
0
Fix null exception when no HPO provided
#599
bartcharbon
closed
5 months ago
0
Fix GADO not executed when no proband column provided
#598
bartcharbon
closed
5 months ago
0
Fix decision tree issues (regarding FLAG and FILE support)
#597
bartcharbon
closed
5 months ago
0
install.sh: suppress git detached head message
#596
dennishendriksen
closed
6 months ago
0
PoC GTEx tissue scores
#595
bartcharbon
opened
6 months ago
0
Feat/bump report 6.0.2
#594
dennishendriksen
closed
6 months ago
0
Update straglr to v2
#593
bartcharbon
closed
6 months ago
0
doc:add preprint link
#592
dennishendriksen
closed
6 months ago
0
Next