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molgenis
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vip
Variant Interpretation Pipeline
https://molgenis.github.io/vip/
GNU Lesser General Public License v3.0
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5
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Update cuteSV 2.0.3 to 2.1.1 and add all parameters
#591
dennishendriksen
closed
6 months ago
0
Bump HPO and GADO 20240208 to 20240404
#590
dennishendriksen
closed
6 months ago
0
Fix straglr issues, sync philres straglr changes, output straglr tsv as intermediate
#589
bartcharbon
closed
6 months ago
0
VIP 7.6.0 - update inheritance
#588
bartcharbon
closed
6 months ago
0
Updated README requirements to be equal to docs
#587
svandenhoek
closed
6 months ago
0
Update ClinVar and update CAPICE model to v5.1.2-v2
#586
bartcharbon
closed
6 months ago
0
Update GADO and HPO to v2024-02-08
#585
dennishendriksen
closed
6 months ago
0
test:update vkgl test data
#584
dennishendriksen
closed
7 months ago
0
feat:add miRNA annotation
#583
dennishendriksen
closed
4 months ago
1
Update README.md
#582
dennishendriksen
closed
7 months ago
0
fix:install.sh re-installs inheritance resource
#581
dennishendriksen
closed
7 months ago
0
docs:add link to vip web interface
#580
dennishendriksen
closed
7 months ago
0
ncER GRCh38 data contains overlapping values
#579
bartcharbon
opened
7 months ago
0
Update minimap 2.26 -> 2.27 + update preset
#578
bartcharbon
closed
7 months ago
0
Update VKGL to feb 2024 version
#577
bartcharbon
closed
7 months ago
0
Remove broken link in documentation
#576
bartcharbon
closed
7 months ago
0
Add ReMM and FATHMM-MKL-NC
#575
bartcharbon
closed
7 months ago
0
Fix: Only run CAPICE if there are variants to do predictions on
#574
bartcharbon
closed
7 months ago
0
Remove support for decision tree labels
#573
bartcharbon
closed
7 months ago
0
Add FAQ for missing read coverage for SV's
#572
bartcharbon
closed
7 months ago
0
Remove VEP workaround for custom bigwig annotation
#571
bartcharbon
closed
7 months ago
0
Fix install script for cases that nextflow already exists
#570
bartcharbon
closed
7 months ago
0
Limit memory used by driver job
#569
bartcharbon
closed
7 months ago
0
Fix incorrect ALT allele order after BCFtools merge
#568
bartcharbon
closed
7 months ago
0
Poc/alphamissense
#567
bartcharbon
opened
8 months ago
0
Bump vip version 7.4.0
#566
bartcharbon
closed
8 months ago
0
Chore/report601
#565
bartcharbon
closed
8 months ago
0
Update decision tree image
#564
bartcharbon
closed
8 months ago
0
Reduce memory needed for picard liftover
#563
bartcharbon
closed
8 months ago
0
Update capice to 5.1.2
#562
bartcharbon
closed
8 months ago
0
Fix plugins for features that do not support transcript
#561
bartcharbon
closed
8 months ago
0
Fix: ncER score can be undefined causing warnings in the VEP plugin
#560
bartcharbon
closed
8 months ago
0
Update key_features.md
#559
bartcharbon
closed
8 months ago
0
change tree order to `filter->vkgl->clinvar->gene->chrom`
#558
dennishendriksen
closed
8 months ago
0
Params to customize classification and reporting metadata
#557
dennishendriksen
closed
8 months ago
0
Bump VEP(111) and ClinVar
#556
bartcharbon
closed
9 months ago
0
Add md5sum for all tests
#555
bartcharbon
closed
9 months ago
0
feat:add vip.sh -v, --version
#554
dennishendriksen
closed
9 months ago
0
Workaround for HTSJDK removing additional ALT headers
#553
bartcharbon
closed
9 months ago
0
Additional test cases
#552
dennishendriksen
closed
9 months ago
0
Update versions to support YL and MT inheritance
#551
bartcharbon
closed
9 months ago
0
GIAB Illumina WES test case + configuration process updates
#550
dennishendriksen
closed
9 months ago
0
Fix VEP plugin warnings
#549
dennishendriksen
closed
9 months ago
0
Fix DeepVariant trio calling out-of-memory errors & GIAB AshkenazimTrio_pacbio_ccs test
#548
dennishendriksen
closed
9 months ago
0
Update inheritance match node: gene must match
#547
dennishendriksen
closed
10 months ago
0
Bump vcf-report 5.8.0 to 5.8.1
#546
dennishendriksen
closed
10 months ago
0
'multiple VIP' installer utility script
#545
dennishendriksen
closed
10 months ago
0
Re-enable long read alignment in report
#544
bartcharbon
closed
10 months ago
0
Methylation
#543
dennishendriksen
opened
10 months ago
0
Fix #336 build.sh only works if ran from script directory
#542
dennishendriksen
closed
10 months ago
0
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