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molgenis
/
vip
Variant Interpretation Pipeline
https://molgenis.github.io/vip/
GNU Lesser General Public License v3.0
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5
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Fix cuteSV workaround
#541
dennishendriksen
closed
10 months ago
0
Installer improvements
#540
dennishendriksen
closed
10 months ago
0
Workaround for Expansionhunter output missing SVTYPE
#539
bartcharbon
closed
10 months ago
0
Fix Java memory usage
#538
dennishendriksen
closed
10 months ago
0
add hint to 'samples from different family' error
#537
dennishendriksen
closed
10 months ago
0
Feature: fastp fastq quality check and filtering
#536
bartcharbon
closed
10 months ago
0
Bump inheritance matcher + fix GIAB tests
#535
bartcharbon
closed
10 months ago
0
gnomAD v4
#534
dennishendriksen
closed
10 months ago
0
Reintroduce cuteSV workaround
#533
bartcharbon
closed
10 months ago
0
Fix bcftools sort --max-mem values
#532
dennishendriksen
closed
10 months ago
0
Update mkdocs.yml: fix site_url and edit_uri
#531
dennishendriksen
closed
11 months ago
0
docs: added capice to acknowledgements
#530
mswertz
closed
11 months ago
0
support GRCh37 and T2T inputs
#529
dennishendriksen
closed
10 months ago
0
Normalize concatted gvcf to remove duplicates
#528
bartcharbon
closed
11 months ago
0
Fix gvcf test data
#527
bartcharbon
closed
11 months ago
0
Fix: crams not reaching the report
#526
bartcharbon
closed
11 months ago
0
Update (variant) feature types in annotation plugins
#525
dennishendriksen
closed
11 months ago
0
Filter on str_status stanger annotation
#524
bartcharbon
closed
11 months ago
0
Drop GRCh37 support
#523
dennishendriksen
closed
11 months ago
0
update requirements: require GNU-based Linux
#522
dennishendriksen
closed
11 months ago
0
Bump/version thresholds
#521
dennishendriksen
closed
11 months ago
0
bump inheritance matcher 2.1.8 to 2.1.9
#520
dennishendriksen
closed
11 months ago
0
Bump vip-report to 5.7.0
#519
bartcharbon
closed
11 months ago
0
fix sample sheet project validation
#518
dennishendriksen
closed
11 months ago
0
update ClinVar 20230910 to 20231104
#517
dennishendriksen
closed
11 months ago
0
update VKGL 202307 to 202311
#516
dennishendriksen
closed
11 months ago
0
update Nextflow 23.04.1 to 23.10.0
#515
dennishendriksen
closed
11 months ago
0
Add AlphaMissense to annotations
#514
joerivandervelde
closed
11 months ago
1
Merge crams based on filelist
#513
bartcharbon
closed
11 months ago
0
default sample decision tree improvements
#512
dennishendriksen
closed
11 months ago
0
Run fixmate and sort parallel on crams
#511
bartcharbon
closed
11 months ago
0
split fastq for non paired ended test
#510
bartcharbon
closed
11 months ago
0
Fix: non paired ended fastq split broken
#509
bartcharbon
closed
11 months ago
0
Update README.md: fix usage
#508
dennishendriksen
closed
11 months ago
0
Replace FTP with HTTPS downloads
#507
dennishendriksen
closed
11 months ago
0
add glnexus.WES preset: DeepVariantWES_MED_DP. remove glnexus.WGS preset: DeepVariantWES
#506
dennishendriksen
closed
11 months ago
0
validate groupTuple calls
#505
dennishendriksen
closed
11 months ago
0
Add ncER annotations to VIP
#504
bartcharbon
closed
11 months ago
0
Update call_sv.nf: add manta paired-end note
#503
dennishendriksen
closed
11 months ago
0
Update annotation documentation
#502
dennishendriksen
closed
11 months ago
0
Prioritizing non-coding variants
#501
dennishendriksen
opened
11 months ago
0
RNA workflow
#500
dennishendriksen
opened
11 months ago
0
Update gado.nf: fix stub
#499
dennishendriksen
closed
11 months ago
0
Parallel fastq processing
#498
bartcharbon
closed
11 months ago
0
Update annotate.nf: fix GADO
#497
dennishendriksen
closed
1 year ago
0
DeepTrio variant calling for trios and duos
#496
dennishendriksen
closed
11 months ago
0
Update annotate.sh: fix GADO plugin call
#495
dennishendriksen
closed
1 year ago
0
Test improvements
#494
dennishendriksen
closed
1 year ago
0
Manta joint SV calling
#493
dennishendriksen
closed
1 year ago
0
util scripts: create reference sequence mmi
#492
dennishendriksen
closed
1 year ago
0
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