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monarch-initiative
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monarch-ingest
Data ingest application for Monarch Initiative knowledge graph using Koza
https://monarchinitiative.org
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Initial downloader
#140
kevinschaper
closed
2 years ago
0
Remove category from edge_properties for all transforms
#139
kevinschaper
closed
2 years ago
1
Create ingest cache
#138
kevinschaper
closed
1 year ago
3
Add download support to Monarch Ingest
#137
kevinschaper
closed
2 years ago
2
Add drug/chemical to disease/phenotype associations from non-human databases
#136
kshefchek
opened
2 years ago
1
First pass at a Dagster pipeline
#135
kevinschaper
closed
2 years ago
0
Consider adding Dictybase gene to phenotype associations
#134
kevinschaper
closed
1 year ago
3
added gene2publication py, yaml, metadata yaml and test files for HGNC ingest
#133
victoriasoesanto
closed
3 years ago
0
added gene2publication , metadata and test files for SGD gene2pub ingest
#132
victoriasoesanto
closed
3 years ago
0
Add Translator compliant provenance to current ingests & documentation
#131
kevinschaper
closed
3 years ago
3
Hodgepodge: set source on all nodes and edges, cleanup & disable alliance g2d, remove human genes from alliance
#130
kevinschaper
closed
3 years ago
0
Adds ingest for phenotype.hpoa
#129
kshefchek
closed
2 years ago
0
added gene2publication yaml, py and metadata yaml files
#128
victoriasoesanto
closed
3 years ago
0
Pombase genes
#127
kevinschaper
closed
2 years ago
0
PomBase Genes
#126
kevinschaper
closed
2 years ago
1
Add OMIM morbidmap ingest for gene to disease associations
#125
kshefchek
closed
2 years ago
1
HGNC Genes
#124
kevinschaper
closed
3 years ago
0
SGD Gene 2 Publication Associations
#123
putmantime
closed
3 years ago
4
Wormbase Gene 2 Publication Associations
#122
putmantime
closed
1 year ago
3
MOD Publications and Gene 2 Pub Associations
#121
putmantime
closed
2 years ago
0
MOD Publications and Gene 2 Publication Associations
#120
putmantime
closed
2 years ago
0
added gene2publication py, yaml and test files
#119
victoriasoesanto
closed
3 years ago
0
Refactors tests to utilize source specific translations (local tables)
#118
kshefchek
closed
3 years ago
0
Add HPO annotations parser
#117
kshefchek
closed
3 years ago
5
Cellosaurus Ingest
#116
putmantime
closed
1 year ago
1
KEGG. Gene2Disease
#115
putmantime
closed
1 year ago
3
Include source name in output files
#114
kevinschaper
closed
3 years ago
4
Alliance pubs
#113
kevinschaper
closed
3 years ago
0
adding gene to publication docs
#112
laurenechan
closed
3 years ago
0
Creating gene2publication files from ZFIN.
#111
laurenechan
closed
3 years ago
0
Xenbase ingest
#110
kevinschaper
closed
2 years ago
0
Xenbase orthology ingest
#109
kevinschaper
closed
1 year ago
5
RGD Publication Mentions Gene
#108
kevinschaper
closed
3 years ago
0
FlyBase Publication Mentions Gene
#107
kevinschaper
closed
3 years ago
0
MGI Publication Mentions Gene
#106
kevinschaper
closed
2 years ago
2
ZFIN Gene to Publication ingest
#105
kevinschaper
closed
2 years ago
0
Add KG-hub style dashboard for Monarch Ingest
#104
kevinschaper
closed
1 year ago
1
Xenbase g2p update
#103
kevinschaper
closed
3 years ago
0
ZFIN Orthology Ingest
#102
putmantime
closed
1 year ago
2
Fixed source file names, added Dagster pipeline generator
#101
kevinschaper
closed
3 years ago
0
Updates to match Koza 0.1.1, removed injectors, flipped metadata dependency
#100
kevinschaper
closed
3 years ago
0
HPOA ingest
#99
matentzn
closed
3 years ago
2
Stub of HPOA ingest as per Kozathon
#98
sierra-moxon
closed
3 years ago
0
bumped kgx & bmt, removed note about FYPO warnings
#97
kevinschaper
closed
3 years ago
0
Feedback instructions kozathon
#96
matentzn
closed
3 years ago
1
Some small fixes to kozathon docs
#95
matentzn
closed
3 years ago
0
Kozathon setup changes
#94
putmantime
closed
3 years ago
0
Added Kozathon setup doc
#93
kevinschaper
closed
3 years ago
0
Orthology from Alliance
#92
putmantime
closed
3 years ago
1
Refresh PHENIO on a weekly basis?
#374
larrybabb
closed
10 months ago
12
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