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monarch-initiative
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monarch-ingest
Data ingest application for Monarch Initiative knowledge graph using Koza
https://monarchinitiative.org
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Implement search interface in SolrImplementation
#392
kevinschaper
closed
1 year ago
1
Integrate monarch-py data model with monarch-api
#391
kevinschaper
closed
1 year ago
0
error on ingest release about deleting latest from monarch-archive
#390
kevinschaper
closed
1 year ago
1
Upgrade to Biolink 3.1.1
#389
kevinschaper
closed
11 months ago
12
Create a Solr artifact
#388
kevinschaper
closed
1 year ago
0
update docs to reflect recent changes in 0.3.7
#387
glass-ships
closed
1 year ago
0
nodes file has both synonym and synonyms columns
#386
kevinschaper
closed
1 year ago
0
synonym now instead of synonyms for consistency
#385
glass-ships
closed
1 year ago
0
Issue 379 hpoa unit tests for frequency scores
#384
RichardBruskiewich
closed
1 year ago
5
Convert all ingests to loop mode
#383
glass-ships
closed
1 year ago
1
Updates Jenkinsfile to fix previous issues with Poetry
#382
glass-ships
closed
1 year ago
0
Non-entrez xenbase orthology + kghub_downloader upgrade
#381
kevinschaper
closed
1 year ago
0
Solve our platform specific poetry dependency complaint by bringing in linkml-dataops explicitly
#380
kevinschaper
closed
1 year ago
1
Add unit tests to confirm HPOA frequency is captured
#379
kevinschaper
closed
1 year ago
1
Orphanet gene to disease ingest proposal
#378
kevinschaper
closed
5 months ago
10
Generate a dashboard directory with metadata and stats for changes from previous release
#377
amc-corey-cox
closed
1 year ago
1
added filter to only include protein coding genes in pombase gene ingest
#376
putmantime
closed
1 year ago
0
Update logging (WIP)
#375
glass-ships
closed
1 year ago
1
Create BGee Ingest for gene to expression
#373
amc-corey-cox
closed
1 year ago
5
Update to solr ingest/run
#372
kevinschaper
closed
1 year ago
0
Temporary fix for goa failure due to file order
#371
glass-ships
closed
1 year ago
1
SGD gaf file causing go ingest to fail
#370
kevinschaper
closed
1 year ago
2
Get phenio relations from BBOP-Sqlite, then filter
#369
kevinschaper
closed
1 year ago
6
Bump pywin32 from 227 to 301
#368
dependabot[bot]
closed
1 year ago
0
Update closurizer
#367
kevinschaper
closed
1 year ago
1
Add hpoa g2p
#366
kevinschaper
closed
1 year ago
0
Updated species in STRING ingest
#365
RichardBruskiewich
closed
1 year ago
0
Pre-processing of Panther AllOrthologs archive to extract data for target species
#364
RichardBruskiewich
closed
1 year ago
0
Upgrade to the latest cat-merge
#363
kevinschaper
closed
1 year ago
0
Speed up Panther ingest
#362
kevinschaper
closed
1 year ago
2
Add link to download KG
#361
cmungall
closed
1 year ago
0
OMIM subjects in omim_gene_to_disease are getting turned into disease nodes
#360
kevinschaper
closed
1 year ago
1
script to load into sqlite
#359
kevinschaper
closed
1 year ago
0
Sqlite artifact / Jenkinsfile tweaks
#358
kevinschaper
closed
1 year ago
0
Create docker compose configuration and scripts for neo4j
#357
kevinschaper
closed
1 year ago
2
Bgee ingest proposal
#356
kevinschaper
closed
1 year ago
10
Dictybase redux
#355
kevinschaper
closed
1 year ago
0
Update cat-merge & kghub-downloader
#354
kevinschaper
closed
1 year ago
0
Update jenkins jobs to reflect recent changes
#353
glass-ships
closed
1 year ago
0
Remove update buckets flag
#352
kevinschaper
closed
1 year ago
1
Create sqlite database artifact
#351
kevinschaper
closed
1 year ago
1
Create association tsv files after merging
#350
kevinschaper
closed
8 months ago
1
Plan our process for publishing a candidate release
#349
kevinschaper
closed
8 months ago
1
Extending Panther ingest to additional species
#348
RichardBruskiewich
closed
1 year ago
1
Set taxon ID for HGNC & SGD genes
#347
kevinschaper
closed
8 months ago
5
update omim links now that we have an api key
#346
glass-ships
closed
1 year ago
0
Set up OMIM download using API key
#345
kevinschaper
closed
1 year ago
0
Update phenio url
#344
kevinschaper
closed
2 years ago
1
Update species list for PANTHER
#343
kevinschaper
closed
1 year ago
3
Update species list for STRING ingest
#342
kevinschaper
closed
4 months ago
2
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