Unzip the file, then move the app to /Applications/
Be patient, the app takes several seconds to open.
Also, when opening the app for the first time, make sure to hold down Control while clicking on the app, and then select 'Open'. Then confirm you want to open this app from an unidentified developer. See here for step by step screenshots.
/Documents/path/to/output/
is fine, but Documents/folder with spaces/to/output/
is not.conda env create -f environment.yml
conda activate podo
git clone https://github.com/monashmicroimaging/podocytes.git
cd podocytes
pip install -e .
Run the main program:
pythonw podocytes/main.py
Compare existing CellCounter marker files to the Podo app results:
pythonw podocytes/validate.py
Quickly count the number of markers in a directory of CellCounter files:
pythonw podocytes/cellcounter_xml.py
pip install -e .
pyinstaller Podo.spec -w -F -y