morinlab GAMBLR.data issues

morinlab / GAMBLR.data

Collection of Curated Data for Genomic Analysis of Mature B-cell Lymphomas in R

https://morinlab.github.io/GAMBLR.data/

MIT License

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issues

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Protein Domain file update

#90 Atlantis-Real closed 1 month ago
0
GAMBLR.data optimization for get_ssm_by_regions

#89 Kdreval closed 2 months ago
0
drop unnecessary dependencies

#88 Kdreval closed 2 months ago
0
miRNA_targetscan

#87 HoumanLM closed 2 months ago
2
Fix NAs in the metadata output

#86 Kdreval closed 2 months ago
2
The disconnect between 2 bundled metadata objects

#85 Kdreval closed 2 months ago
0
Add `get_cnv_and_ssm_status` .data version

#84 vladimirsouza opened 4 months ago
1
major performance upgrade for get_ssm_by_regions

#83 rdmorin closed 2 months ago
0
Fix get_ssm_by_regions when maf_data is provided

#82 vladimirsouza closed 4 months ago
0
Duplicate sample ids in the metadata

#81 vladimirsouza closed 4 months ago
1
Adding more data, bug fixes, other improvements

#80 Kdreval closed 5 months ago
1
Dont export get_ssm_by_sample/_region

#79 vladimirsouza closed 6 months ago
0
The badge README.md doesn't show up

#78 vladimirsouza closed 6 months ago
1
setup all ssm functions to support study subsetting

#77 Kdreval closed 5 months ago
1
Setup metadata to support `case_set` argument

#76 Kdreval closed 5 months ago
1
Add HNRNPU to aSHM region list

#75 Kdreval closed 6 months ago
2
Updates and bug fixes

#74 Kdreval closed 6 months ago
1
tests need to be dropped or modified

#73 Kdreval closed 6 months ago
2
missing documentation

#72 Kdreval closed 6 months ago
1
missing dataset documentation

#71 Kdreval closed 6 months ago
1
cyclic dependency

#70 Kdreval closed 6 months ago
2
Fix id_ease when metadata and seq_type are provided

#69 vladimirsouza closed 6 months ago
0
README is outdated

#68 Kdreval closed 6 months ago
1
Github actions for GAMBLR.data

#67 Kdreval closed 6 months ago
1
Bundle DLBCL Trios with GAMBLR.data

#66 Kdreval closed 6 months ago
1
Bundle Arthur et al with GAMBLR.data

#65 Kdreval closed 6 months ago
2
Website

#64 Kdreval closed 6 months ago
1
Remove duplicates in get_ssm_by_* using distinct

#63 vladimirsouza closed 6 months ago
4
`sample_data[[projection]]$ashm` misses `RefSeq` column

#62 vladimirsouza opened 6 months ago
0
get_ashm_counts_matrix is missing check for provided maf data

#61 Kdreval closed 7 months ago
0
new feature: adding get_ashm_count_matrix

#60 Kdreval closed 7 months ago
3
Create GAMBLR.data version of `get_ashm_count_matrix`

#59 Kdreval closed 7 months ago
1
get_coding_ssm_status is missing some features

#58 rdmorin closed 7 months ago
4
Add function `get_cnv_and_ssm_status`

#57 vladimirsouza opened 7 months ago
2
Add metadata description and update `get_coding_ssm_status`

#56 Kdreval closed 7 months ago
2
README update

#55 Kdreval closed 7 months ago
2
Finish GAMBLR child repos and update documentation

#54 rdmorin closed 7 months ago
3
Adding ashm variants and slsm-3 variants for published samples

#53 Kdreval closed 7 months ago
4
The Pipeline column of bundled variant calls is not up-to-date

#52 Kdreval closed 7 months ago
1
bundling ashm data with the package

#51 Kdreval closed 7 months ago
1
new functionality: adding functions and data for cFL classifier

#50 Kdreval closed 7 months ago
0
Downgrade check_excess_params to warning message

#49 vladimirsouza closed 8 months ago
11
Discrepancies in how the two objects grch37_gene_coordinates and hg38_gene_coordinates are compiled.

#48 mattssca opened 9 months ago
0
Hotfix for get_ssm_by_sample (alias)

#47 mattssca closed 9 months ago
0
Bug in get_ssm_by_sample

#46 mattssca closed 9 months ago
0
Rename get_ssm_by_sample arg to this_sample_id

#45 vladimirsouza closed 9 months ago
0
Function import tags vs. in-code package prefixing

#44 mattssca opened 9 months ago
0
Vignettes

#43 mattssca closed 9 months ago
1
new feature: adding schmitz and chapuy calls in lymphoma genes

#42 Kdreval closed 10 months ago
0
Add DLBCL cell lines data to bundled sample_data

#41 Kdreval closed 10 months ago
1