issues
search
morinlab
/
GAMBLR.data
Collection of Curated Data for Genomic Analysis of Mature B-cell Lymphomas in R
https://morinlab.github.io/GAMBLR.data/
MIT License
2
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Protein Domain file update
#90
Atlantis-Real
closed
1 month ago
0
GAMBLR.data optimization for get_ssm_by_regions
#89
Kdreval
closed
2 months ago
0
drop unnecessary dependencies
#88
Kdreval
closed
2 months ago
0
miRNA_targetscan
#87
HoumanLM
closed
2 months ago
2
Fix NAs in the metadata output
#86
Kdreval
closed
2 months ago
2
The disconnect between 2 bundled metadata objects
#85
Kdreval
closed
2 months ago
0
Add `get_cnv_and_ssm_status` .data version
#84
vladimirsouza
opened
4 months ago
1
major performance upgrade for get_ssm_by_regions
#83
rdmorin
closed
2 months ago
0
Fix get_ssm_by_regions when maf_data is provided
#82
vladimirsouza
closed
4 months ago
0
Duplicate sample ids in the metadata
#81
vladimirsouza
closed
4 months ago
1
Adding more data, bug fixes, other improvements
#80
Kdreval
closed
5 months ago
1
Dont export get_ssm_by_sample/_region
#79
vladimirsouza
closed
6 months ago
0
The badge README.md doesn't show up
#78
vladimirsouza
closed
6 months ago
1
setup all ssm functions to support study subsetting
#77
Kdreval
closed
5 months ago
1
Setup metadata to support `case_set` argument
#76
Kdreval
closed
5 months ago
1
Add HNRNPU to aSHM region list
#75
Kdreval
closed
6 months ago
2
Updates and bug fixes
#74
Kdreval
closed
6 months ago
1
tests need to be dropped or modified
#73
Kdreval
closed
6 months ago
2
missing documentation
#72
Kdreval
closed
6 months ago
1
missing dataset documentation
#71
Kdreval
closed
6 months ago
1
cyclic dependency
#70
Kdreval
closed
6 months ago
2
Fix id_ease when metadata and seq_type are provided
#69
vladimirsouza
closed
6 months ago
0
README is outdated
#68
Kdreval
closed
6 months ago
1
Github actions for GAMBLR.data
#67
Kdreval
closed
6 months ago
1
Bundle DLBCL Trios with GAMBLR.data
#66
Kdreval
closed
6 months ago
1
Bundle Arthur et al with GAMBLR.data
#65
Kdreval
closed
6 months ago
2
Website
#64
Kdreval
closed
6 months ago
1
Remove duplicates in get_ssm_by_* using distinct
#63
vladimirsouza
closed
6 months ago
4
`sample_data[[projection]]$ashm` misses `RefSeq` column
#62
vladimirsouza
opened
6 months ago
0
get_ashm_counts_matrix is missing check for provided maf data
#61
Kdreval
closed
7 months ago
0
new feature: adding get_ashm_count_matrix
#60
Kdreval
closed
7 months ago
3
Create GAMBLR.data version of `get_ashm_count_matrix`
#59
Kdreval
closed
7 months ago
1
get_coding_ssm_status is missing some features
#58
rdmorin
closed
7 months ago
4
Add function `get_cnv_and_ssm_status`
#57
vladimirsouza
opened
7 months ago
2
Add metadata description and update `get_coding_ssm_status`
#56
Kdreval
closed
7 months ago
2
README update
#55
Kdreval
closed
7 months ago
2
Finish GAMBLR child repos and update documentation
#54
rdmorin
closed
7 months ago
3
Adding ashm variants and slsm-3 variants for published samples
#53
Kdreval
closed
7 months ago
4
The Pipeline column of bundled variant calls is not up-to-date
#52
Kdreval
closed
7 months ago
1
bundling ashm data with the package
#51
Kdreval
closed
7 months ago
1
new functionality: adding functions and data for cFL classifier
#50
Kdreval
closed
7 months ago
0
Downgrade check_excess_params to warning message
#49
vladimirsouza
closed
8 months ago
11
Discrepancies in how the two objects grch37_gene_coordinates and hg38_gene_coordinates are compiled.
#48
mattssca
opened
9 months ago
0
Hotfix for get_ssm_by_sample (alias)
#47
mattssca
closed
9 months ago
0
Bug in get_ssm_by_sample
#46
mattssca
closed
9 months ago
0
Rename get_ssm_by_sample arg to this_sample_id
#45
vladimirsouza
closed
9 months ago
0
Function import tags vs. in-code package prefixing
#44
mattssca
opened
9 months ago
0
Vignettes
#43
mattssca
closed
9 months ago
1
new feature: adding schmitz and chapuy calls in lymphoma genes
#42
Kdreval
closed
10 months ago
0
Add DLBCL cell lines data to bundled sample_data
#41
Kdreval
closed
10 months ago
1
Next