morrislab qapa issues - Githubissues

morrislab / qapa

RNA-seq Quantification of Alternative Polyadenylation

GNU General Public License v3.0

42 stars 10 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Error:Failed to find any overlap between UTRs and annotation

#55 pdxxxlm opened 10 months ago
1
Can qapa use for quantifying the other type apa, like intronic apa?

#53 StaggererAyao opened 1 year ago
1
AttributeError: 'NoneType' object has no attribute 'finalize'

#52 hlldhy opened 1 year ago
0
how to get clusters.mm10.bed

#51 hlldhy closed 1 year ago
0
error about qapa build

#50 haojin9288 closed 1 year ago
5
qapa quant / create_merged_data.R - Error splitting name field when gene IDs have _PAR_Y suffix

#49 SamBryce-Smith opened 1 year ago
1
Do you have a suggested option for the Salmon quant command?

#48 dontkme opened 1 year ago
0
Error in qapa quant

#47 Prakrithi-P closed 1 year ago
3
Can i use QAPA to quantify APA usage based on long reads transciptome data (nanopore or pacbio single molecule sequencing)?

#46 operoncao opened 2 years ago
4
Update rlang

#45 kcha closed 2 years ago
0
AttributeError: 'Namespace' object has no attribute 'debug'

#44 AdiTecki closed 2 years ago
4
A problem about qapa build

#43 NJU-Bio-Info closed 2 years ago
5
How to make figure 3

#42 zhanglab2008 closed 1 year ago
1
hg38 3'UTR data and ensembl identifiers

#41 jalalsiddiqui closed 1 year ago
1
QAPA fasta ERRO

#40 wqy399 closed 3 years ago
6
Error in using qapa quant

#39 yuntaoyang opened 4 years ago
0
Differential APA genes

#38 thomasthtc opened 4 years ago
4
Questions about APA genes proportion in QAPA library for mouse and human

#37 Sylarair opened 4 years ago
0
Raw read counts from salmon_quant files

#36 snosna closed 4 years ago
3
Error in qapa build using custom BED file

#35 snosna closed 4 years ago
4
Expression quantification

#34 stsergbg opened 4 years ago
0
Error of salmon indexing

#33 chilampoon closed 4 years ago
2
Hierarchical clustering problem in QAPA article

#32 boiscat closed 4 years ago
0
The mapping rate is low when using salmon to quant the transcript expression with utr_library.

#31 boiscat closed 4 years ago
1
some columns are not in the data.table: Gene

#30 dktanwar closed 4 years ago
4
pandas.errors.EmptyDataError: No columns to parse from file

#29 cxshine closed 4 years ago
0
ValueError: invalid literal for int() with base 10: '+'

#28 Sylarair closed 4 years ago
5
v1.3.0

#27 kcha closed 5 years ago
0
Error: invalid literal for int() with base 10: '0.0109'

#26 dktanwar closed 5 years ago
1
error: Insufficient number of columns in gene prediction file

#25 shannjiang closed 5 years ago
2
visualize pau_text output file in IGV

#24 YONGJINGYEN closed 5 years ago
3
No alignment to eIF3b

#23 latacca closed 5 years ago
2
build library for hg38

#22 biofisherman closed 5 years ago
10
Build library for rat

#21 jchariker closed 5 years ago
2
An error when running qapa

#20 Sylarair closed 5 years ago
0
How to deal with replicates

#19 niehu2018 closed 5 years ago
1
Looking at 5-utr/first Exon usage

#18 seq101 closed 5 years ago
3
output interpretation

#17 deschec closed 5 years ago
2
Install Error

#16 tyaoi closed 5 years ago
1
NA annotations in pau table (drosophila, dm6)

#15 mirax87 closed 5 years ago
10
Build Library for Drosophila

#14 leggles closed 5 years ago
5
Incompatibility with latest data.table version (1.12.2)

#13 bepoli opened 5 years ago
8
Is QAPA suitable for tot-RNA-Seq?

#12 xflicsu closed 5 years ago
3
WARNING. chromosome (chrY) was not found in the FASTA file. Skipping.

#11 pent1162 closed 5 years ago
1
Error: Unable to detect format

#10 pent1162 closed 5 years ago
5
Differential APA between two conditions?

#9 xflicsu closed 5 years ago
1
Extract 3'UTR issue

#8 fhh819 closed 6 years ago
6
Apply quality filtration on PAU

#7 obenno closed 6 years ago
6
Minimum distance between any two poly(A) sites

#6 Trandamere closed 6 years ago
2
v1.2.0

#5 kcha closed 6 years ago
0