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mortazavilab
/
swan_vis
A Python library to visualize and analyze long-read transcriptomes
https://freese.gitbook.io/swan/
MIT License
54
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11
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Speeding up Exon skipping and intron retention on HPC
#30
rugilemat
opened
5 months ago
0
sg.add_adata(adata_file) not working
#29
wdg118
closed
5 months ago
5
olgabot/colorize browser path
#28
olgabot
closed
6 months ago
2
Index contains duplicate entries, cannot reshape
#27
rugilemat
closed
5 months ago
4
Adding transcriptome in a TALON-independent way?
#26
lscdanson
opened
7 months ago
3
Correctly parse GTF files with semicolons and spaces in free-form column values.
#25
kreldjarn
closed
6 months ago
0
Switch diffexp to pydeseq2 for differential gene and transcript expression testing
#24
fairliereese
opened
1 year ago
1
MemoryError: Unable to allocate 113. GiB for an array with shape (9992, 3033596) and data type float32
#23
catsargent
closed
1 year ago
5
Example code problem
#22
liuxiawei
closed
1 year ago
1
find_es_genes returns duplicated entries
#21
fairliereese
opened
2 years ago
0
Differential isoform usage multiple conditions
#20
rsalz
opened
2 years ago
1
Issues differential expression
#19
rsalz
closed
1 year ago
3
relation between splicing in/out sites and exons
#18
xiaonalu
closed
2 years ago
5
plot a transcript with all transcripts as background
#17
xiaonalu
closed
1 year ago
8
replace talon.db
#16
xiaonalu
closed
2 years ago
10
AttributeError: 'SwanGraph' object has no attribute 'ass_transcriptome'
#15
xiaonalu
closed
2 years ago
2
Missing transcripts
#14
rsalz
closed
2 years ago
3
Development
#13
fairliereese
closed
3 years ago
0
Development
#12
fairliereese
closed
3 years ago
0
Intron retention and exon skipping analysis
#11
rsalz
closed
3 years ago
22
swanvis broken?
#10
rsalz
closed
3 years ago
3
Novelty info not found
#9
SziKayLeung
closed
3 years ago
3
Missing case for plottedgraph init
#8
fairliereese
closed
3 years ago
2
Ir es change
#7
fairliereese
closed
4 years ago
0
ES IR error
#6
ashokpatowary
closed
4 years ago
10
ValueError
#5
ashokpatowary
closed
4 years ago
10
self.create_dfs_db(fname, annot, whitelist, 'hepg2_1')
#4
ashokpatowary
closed
4 years ago
2
cannot load swan into python using recommended installation method
#3
smorabit
opened
4 years ago
0