add HeatmapGraph - Githubissues

motleystate / moonstone

Library to perform Metagenomics data analysis with Python

https://moonstone.readthedocs.io/en/latest/?badge=latest

MIT License

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add HeatmapGraph #56

Closed khillion closed 3 years ago

khillion commented 3 years ago

Description

Add support for heatmap and use it for visualization of diversity p-values.

Changelogs

add HeatmapGraph to support heatmap visualization (plot.graphs.heatmap)
use heatmap visualization when analyzing groups in diversity. Can choose to visualize or not with show_pval option.

Issue(s)

Fixes #55

Definition of Done

[ ] New code is tested with unit tests
[ ] Documentation has been updated
[x] Pull Request has been revised by a maintainer of the project

khillion commented 3 years ago

converted to draft to handle output_file option for pvalue graph

AgnesBaud commented 3 years ago

Just one question related to the p-value correction I'm working on, what kind of input does Heatmap take? Only symmetric dataframe?

khillion commented 3 years ago

Just one question related to the p-value correction I'm working on, what kind of input does Heatmap take? Only symmetric dataframe?

@AgnesBaud HeatmapGraph takes whatever dataframe you give it to represent it. You will have indexes as y and columns as x and the content of each cells as z. So for the context of p-value, you need to make sure it is a dataframe.