motleystate / moonstone

Library to perform Metagenomics data analysis with Python
https://moonstone.readthedocs.io/en/latest/?badge=latest
MIT License
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pvalue correction in analyse groups #57

Closed AgnesBaud closed 3 years ago

AgnesBaud commented 3 years ago

Description

Optional correction of p-values with multipletests from statsmodels.stats.multitest. Different pvalues output = series or dataframe, symmetric or not

Changelogs

Definition of Done

AgnesBaud commented 3 years ago

Missing tests

codecov-io commented 3 years ago

Codecov Report

Merging #57 (6fe4926) into master (909b2f0) will increase coverage by 0.84%. The diff coverage is 80.00%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master      #57      +/-   ##
==========================================
+ Coverage   56.86%   57.70%   +0.84%     
==========================================
  Files          56       56              
  Lines        2128     2149      +21     
==========================================
+ Hits         1210     1240      +30     
+ Misses        918      909       -9     
Flag Coverage Δ
unittests 57.70% <80.00%> (+0.84%) :arrow_up:

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Impacted Files Coverage Δ
moonstone/analysis/statistical_test.py 91.12% <ø> (+9.67%) :arrow_up:
moonstone/normalization/reads/downsize_dir.py 0.00% <ø> (ø)
moonstone/normalization/reads/read_downsize.py 0.00% <ø> (ø)
moonstone/utils/plot.py 94.73% <50.00%> (ø)
moonstone/analysis/diversity/base.py 75.42% <82.60%> (+2.22%) :arrow_up:

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