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motleystate / moonstone

Library to perform Metagenomics data analysis with Python
https://moonstone.readthedocs.io/en/latest/?badge=latest
MIT License
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start parser for metaphlan3 #60

Closed khillion closed 3 years ago

khillion commented 3 years ago

Description

Following the modification of format of metaphlan3 output merged table, new parser was need.

Changelogs

Definition of Done

khillion commented 3 years ago

@skennedy8 here is the begining of the parser for metaphlan3 output.

It should give the same structure as the previous one.

We should keep in mind that maybe we could also use second column that corresponds to NCBI tax ID.

skennedy8 commented 3 years ago

Yes, this works as expected on the MITICA MF3 table. Thanks!