motleystate / moonstone

Library to perform Metagenomics data analysis with Python
https://moonstone.readthedocs.io/en/latest/?badge=latest
MIT License
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Faith's PD + UniFrac #75

Closed AgnesBaud closed 3 years ago

AgnesBaud commented 3 years ago

Description

incorporate Faith's PD and UniFrac to analysis/diversity/alpha and /beta respectively.

Changelogs

Issue(s)

Fixes #74

Definition of Done

codecov-commenter commented 3 years ago

Codecov Report

Merging #75 (27bdd94) into master (d48d525) will increase coverage by 0.58%. The diff coverage is 100.00%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master      #75      +/-   ##
==========================================
+ Coverage   57.94%   58.53%   +0.58%     
==========================================
  Files          60       60              
  Lines        2423     2455      +32     
==========================================
+ Hits         1404     1437      +33     
+ Misses       1019     1018       -1     
Flag Coverage Δ
unittests 58.53% <100.00%> (+0.58%) :arrow_up:

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Impacted Files Coverage Δ
moonstone/analysis/diversity/alpha.py 97.91% <100.00%> (+1.25%) :arrow_up:
moonstone/analysis/diversity/beta.py 74.35% <100.00%> (+4.66%) :arrow_up:
moonstone/analysis/statistical_test.py 92.85% <100.00%> (+0.92%) :arrow_up:

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