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mourisl
/
Lighter
Fast and memory-efficient sequencing error corrector
GNU General Public License v3.0
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Getting `died with <Signals.SIGKILL: 9>` when trying to run Lighter with the human genome size (3.2MB)
#36
PeterSu92
opened
1 year ago
10
line 15: 7429 Segmentation fault
#35
theo-allnutt-bioinformatics
closed
1 year ago
5
Test - error report - 0 corrected reads?
#34
desmodus1984
opened
3 years ago
7
Update Makefile to work nicely with conda
#33
andersgs
closed
2 years ago
1
EC on Raw or Trimmed?
#32
AllisonStander
closed
3 years ago
1
When to use noQual and newQual ascii_quality_score
#31
AllisonStander
closed
5 years ago
2
Segmentation fault when using -t > 2
#30
ealdraed
closed
3 years ago
3
Multiple input files
#29
AllisonStander
closed
2 years ago
8
Appropriate for 2.5 Gbp Plant Genome?
#28
AllisonStander
closed
3 years ago
2
Issue with loading trusted k-mers
#27
standage
opened
6 years ago
5
Trimmed and untrimmed read reported
#26
standage
closed
6 years ago
2
lighter installed from homebrew fails to complete
#25
rec3141
opened
7 years ago
3
Major behaviour change from 1.0.7 to 1.1.1
#24
tseemann
opened
8 years ago
4
Add advice to "brew install lighter"
#23
tseemann
closed
8 years ago
1
Lighter 1.1.1 has LIGHTER_VERSION = 1.1.0
#22
tseemann
closed
8 years ago
2
Add addional lighter installation instructions
#21
bgruening
closed
8 years ago
9
Unintentional trimming of sequences
#20
schmeing
closed
8 years ago
3
Invalid fastq files produced
#19
habibr
closed
8 years ago
2
selecting k-mer size greater than 32
#18
AisaacO
closed
8 years ago
3
Support CmdLine Basics
#17
proebuck
closed
8 years ago
3
modify extension of output files
#16
cjprybol
closed
9 years ago
2
Update quality scores when doing error correction
#15
chuckcoder
closed
9 years ago
2
Optional level-1 gzip output?
#14
lh3
closed
9 years ago
3
A couple of suggestions
#13
lh3
closed
9 years ago
1
Issue with Lighter performance
#12
flashton2003
opened
9 years ago
5
Wrong number of reads detected
#11
vcepeda
opened
9 years ago
0
invalid fastq file not being detected
#10
vcepeda
opened
9 years ago
0
Point to README for information on setting alpha
#9
bede
closed
9 years ago
0
Error correction fails with small genome sizes
#8
bede
closed
9 years ago
6
undefined reference to `gzgets'
#7
macmanes
closed
9 years ago
3
auto-detect quality encoding
#6
macmanes
closed
9 years ago
5
accept .gz files
#5
macmanes
closed
9 years ago
2
Bloom Filter A error rate
#4
macmanes
opened
9 years ago
1
Segfault - after/during(?) storing trusted kmers
#3
ratman
closed
10 years ago
2
Produce a correction report
#2
tseemann
closed
9 years ago
1
move linker flags to the end
#1
slowkow
closed
10 years ago
1