mpxv-lineages / lineage-designation

Official place for proposals and details around monkeypox virus lineage designations
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Proposal for a sublineage of B.1 with G5595A [19 sequences as of 2022-08-19] #11

Closed corneliusroemer closed 2 years ago

corneliusroemer commented 2 years ago

There's another branch of the B.1 polytomy that appears to satisfy the lineage designation criteria, defined by SNP 5595

This mutation is in the inverted terminal repeat - so there's a corresponding SNP at C191615T. This SNP does not appear in the Nextstrain tree because the 3' end is masked to prevent all ITR SNPs from appearing twice.

image

https://nextstrain.org/monkeypox/hmpxv1?c=gt-nuc_5595&m=div