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mrc-ide
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squire
SEIR transmission model of COVID-19. Documentation at:
https://mrc-ide.github.io/squire/
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bump ODIN version in DESCRIPTION
#132
cwhittaker1000
closed
3 years ago
2
Dexamethasone
#131
pwinskill
opened
4 years ago
0
Calrification of definition of infections in output
#130
pwinskill
opened
4 years ago
0
outputting hospitalisation incidence
#129
cwhittaker1000
closed
4 years ago
3
Fixed typo on paragraph 148
#128
kant
closed
3 years ago
0
0.4.21 evaluate Rt fix
#127
OJWatson
closed
4 years ago
0
Plotting deterministic output throws an error
#126
giovannic
closed
4 years ago
3
Johnstone Chang Optimisation Algorithm for Metropolis-Hastings MCMC Framework
#125
cwhittaker1000
closed
4 years ago
0
Deterministic timing and output formatting
#124
pwinskill
closed
4 years ago
0
0.4.20
#123
OJWatson
closed
4 years ago
0
Deterministic functionality throughout
#122
OJWatson
closed
4 years ago
0
0.4.18
#121
OJWatson
closed
4 years ago
0
User Guide Queries for the Squire Model
#120
DufferDavies
opened
4 years ago
2
0.4.17
#119
OJWatson
closed
4 years ago
0
Robbins-Monro optimisation infrastructure
#118
cwhittaker1000
closed
4 years ago
0
remove r from projections
#117
OJWatson
opened
4 years ago
0
projections to take a list of individual change parameters
#116
OJWatson
opened
4 years ago
0
Pmcmc
#115
OJWatson
closed
4 years ago
1
Baseline_contact_matrix argument addition
#114
cwhittaker1000
closed
3 years ago
0
seed mixed up with seeding_cases in run.R
#113
skyehersh
opened
4 years ago
2
Reporting fraction in calibrate raises warnings and freezes grid search
#112
sidravi1
closed
4 years ago
2
Inconsistent Occupancy Figures
#111
lrossouw
opened
4 years ago
5
0.4.15 - projections fixes
#110
OJWatson
closed
4 years ago
0
Implementing ODIN sample without replacement
#109
cwhittaker1000
closed
4 years ago
0
Constant seeding of infections - Simulating external introduction of infections (travel)
#108
arranhamlet
opened
4 years ago
0
Clarification of probabilities
#107
aj2duncan
opened
4 years ago
1
0.4.13
#106
OJWatson
closed
4 years ago
0
Daily number of infections chart scaling
#105
pastk
closed
4 years ago
2
differentiating between baseline and modified contact matrices
#104
cwhittaker1000
opened
4 years ago
0
Source for example_DZA_intervention file
#103
pahanc
closed
4 years ago
4
v 0.4.12
#102
OJWatson
closed
4 years ago
0
Patches to projections
#101
OJWatson
closed
4 years ago
0
Problem installing the package
#100
mutono
closed
4 years ago
1
deterministic functions to match stochastic
#99
OJWatson
opened
4 years ago
1
Updates to allow for interventions to occur prior to epidemic start in calibrate
#98
OJWatson
closed
4 years ago
0
0.4.8 - calibrate reporting fraction passed through to likelihood
#97
OJWatson
closed
4 years ago
0
Lowercase odin
#96
richfitz
closed
4 years ago
0
3D grid search incorporated
#95
OJWatson
closed
4 years ago
0
Explanation section for unintuitive results
#94
OJWatson
opened
4 years ago
0
v0.4.4
#93
OJWatson
closed
4 years ago
0
Allow custom model for deterministic
#92
giovannic
closed
4 years ago
1
Fix to plot.scan_results for probability
#91
OJWatson
closed
4 years ago
0
Particle
#90
OJWatson
closed
4 years ago
0
Parameterise det using shared method
#89
giovannic
closed
4 years ago
0
Minor fix (proposal) on paragraph 44
#88
kant
closed
4 years ago
0
Add format_deterministic_output
#87
giovannic
closed
4 years ago
1
Particle Filter
#86
OJWatson
closed
4 years ago
0
Squire js
#85
giovannic
closed
4 years ago
0
get_mixing_matrix doesn't take iso3c
#84
arranhamlet
closed
4 years ago
0
calibrate while loop fix
#83
OJWatson
closed
4 years ago
0
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