mrc-ide squire issues - Githubissues

mrc-ide / squire

SEIR transmission model of COVID-19. Documentation at:

https://mrc-ide.github.io/squire/

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request for US State population in get_popualtion

#82 OJWatson opened 4 years ago
0
Projections + New parameters

#81 OJWatson closed 4 years ago
0
R0_change as argument to calibrate

#80 OJWatson closed 4 years ago
0
R0, hosp etc in projection become lists of vector inputs

#79 OJWatson closed 4 years ago
0
update the pkgdown.yml

#78 OJWatson closed 4 years ago
0
expose t0_variables

#77 OJWatson closed 4 years ago
0
Callibrating when cases have occured but not deaths

#76 arranhamlet opened 4 years ago
0
Avoid partial matches

#75 richfitz closed 4 years ago
0
Projections

#74 OJWatson closed 4 years ago
0
Calibrate doesn't allow custom populations/contact matricies

#73 arranhamlet closed 4 years ago
0
weird plot with summary line

#72 OJWatson closed 4 years ago
1
Incorporating time-varying hospital/ICU bed capacity

#71 cwhittaker1000 closed 4 years ago
1
Develop in for orderly plots

#70 OJWatson closed 4 years ago
0
plot not displaying date when date_0 passed alongside calibration output

#69 cwhittaker1000 closed 4 years ago
0
Newest readme updates

#68 cwhittaker1000 closed 4 years ago
0
Update format output

#67 cwhittaker1000 closed 4 years ago
1
README knit update

#66 OJWatson closed 4 years ago
0
Development of orderly plots (again...)

#65 OJWatson closed 4 years ago
0
Update readme

#64 OJWatson closed 4 years ago
0
collapse_compartment works even if only a subset of relevant variables are available

#63 cwhittaker1000 closed 4 years ago
0
Calibration targets

#62 pwinskill closed 4 years ago
0
Calibration hard coding

#61 pwinskill closed 4 years ago
0
Include full fucntionality to collapse_compartment()

#60 pwinskill closed 4 years ago
0
tt_R0 and tt_matrix changed so that they're aligned with timestep in ODIN

#59 cwhittaker1000 closed 4 years ago
0
Enhancement/output format

#58 pwinskill closed 4 years ago
2
Plotting/Output group simplification

#57 pwinskill closed 4 years ago
0
Calibration plotting

#56 pwinskill closed 4 years ago
0
v0.2.2

#55 OJWatson closed 4 years ago
0
Update calibrate function to incorporate uncertainty in seed size and distribution across age-groups

#54 cwhittaker1000 closed 4 years ago
1
matrix 12 issue fixed

#53 cwhittaker1000 closed 4 years ago
0
switch to ISO3C for countries

#52 OJWatson closed 4 years ago
0
matrix 12 is not a matrix

#51 OJWatson closed 4 years ago
1
consider changing the way we do seeding given we're calibrating to small numbers of deaths

#50 cwhittaker1000 closed 4 years ago
5
integrate deterministic model into the package more formally

#49 cwhittaker1000 closed 4 years ago
0
change default dt

#48 cwhittaker1000 closed 4 years ago
1
automatic retrieval of healthcare capacity information for countries

#47 cwhittaker1000 closed 4 years ago
1
Enhancement/generalised plot

#46 pwinskill closed 4 years ago
3
v0.2.1 helper_functions in. (#37)

#45 OJWatson closed 4 years ago
0
Calibrate with the view of putting interventions on a date

#44 OJWatson closed 4 years ago
0
Patrick test

#43 OJWatson closed 4 years ago
1
model output quite sensitive to choice of dt

#42 cwhittaker1000 closed 4 years ago
4
Further plotting options

#41 pwinskill closed 4 years ago
1
fix default hosp and ICU bed capacity parameters in run_explicit_SEEIR function

#40 cwhittaker1000 closed 4 years ago
0
run_explicit_SEEIR issue when hosp_bed_capacity not specified

#39 cwhittaker1000 closed 4 years ago
4
helper function to extract relevant outputs from squire_simulation ob…

#38 cwhittaker1000 closed 4 years ago
2
write helper functions to extract relevant outputs from run_SEEIR_explicit

#37 cwhittaker1000 closed 4 years ago
1
update to readme. no appeveyor

#36 OJWatson closed 4 years ago
0
badges

#35 OJWatson closed 4 years ago
0
align with global reports

#34 OJWatson closed 4 years ago
0
severity model and age categories

#33 patrickgtwalker closed 4 years ago
1

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