ms609 Quartet issues - Githubissues

ms609 / Quartet

R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)

https://ms609.github.io/Quartet/

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issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

Adding functionality for trees with more than 477 leaves

#68 simone-says opened 2 months ago
1
Use centroid path decomposition tree algorithm

#67 ms609 opened 6 months ago
0
Calculating Quartet distance for trees with >500 leaves

#66 MurrelSaldanha opened 6 months ago
1
`VisualizeQuartet()` return value

#65 ms609 closed 7 months ago
1
Unifurcating root causes ` QuartetDistance`, `TripletDistance` error

#64 mmore500 opened 1 year ago
2
Analyze the package with RcppDeepState

#63 FabrizioSandri closed 2 years ago
8
Replace `viridsLite` with `hcl.colors()`

#62 ms609 opened 2 years ago
1
Leaf stability indices

#61 ms609 opened 3 years ago
0
Allow comparison when tips aren't identical

#60 ms609 opened 3 years ago
0
Memory leak

#59 ms609 opened 3 years ago
0
Diagnose memory leak

#58 ms609 closed 2 years ago
0
Switch to inline citations

#57 ms609 closed 7 months ago
0
Create R-CMD-check.yml

#56 ms609 closed 3 years ago
1
v1.2.0

#55 ms609 closed 4 years ago
1
`VisualizeQuartets()`

#54 ms609 closed 4 years ago
0
Improve code coverage

#53 ms609 closed 4 years ago
0
C++ implementation of `QuartetStates()`

#52 ms609 closed 4 years ago
1
Tree comparison when trees may have non-identical leaves

#51 ms609 closed 4 years ago
1
C++ implementation of `AllQuartets()`

#50 ms609 closed 4 years ago
1
Use `int_fast16_t` where possible

#49 ms609 opened 4 years ago
0
rowSums() → .rowSums()

#48 ms609 closed 4 years ago
0
Online help pages

#47 ms609 closed 4 years ago
0
Update documentation

#46 ms609 closed 4 years ago
0
Improve performance of `QuartetStates()`

#45 ms609 closed 4 years ago
0
Improve performance of `QuartetStates()`

#44 ms609 closed 4 years ago
0
class → inherits, and tidy

#43 ms609 closed 4 years ago
0
1.1.0 tidying

#42 ms609 closed 4 years ago
0
v1.1.0

#41 ms609 closed 5 years ago
0
Calculate status from 3D arrays

#40 ms609 closed 5 years ago
0
Pass trees to C without Newick middleman

#39 ms609 closed 5 years ago
1
Pass edges directly to C

#38 ms609 closed 5 years ago
1
Metrics documentation

#37 ms609 closed 5 years ago
0
Matrixificate Travis

#36 ms609 closed 5 years ago
1
TreeTools

#35 ms609 closed 5 years ago
1
Use TreeTrunk, not TreeSearch

#34 ms609 closed 5 years ago
0
ptr_fun

#33 ms609 closed 5 years ago
0
Other metrics

#32 ms609 closed 5 years ago
3
Portability

#31 ms609 closed 5 years ago
2
Improve portability

#30 ms609 closed 5 years ago
0
Is it necessary to fill out tables?

#29 ms609 closed 5 years ago
0
Improve vignettes by discussing generalized RF distances as an alternative

#28 ms609 closed 5 years ago
0
Documentation improvements

#27 ms609 closed 5 years ago
3
Establish that quartet metrics make sense when used with partitions

#26 ms609 closed 5 years ago
0
Use consistent structure and metrics for partitions as for quartets

#25 ms609 closed 5 years ago
1
Update documentation for splits

#24 ms609 closed 5 years ago
0
Use r, d, s, u structure for SplitStatus

#23 ms609 closed 5 years ago
0
Improve performance by passing trees directly to C

#22 ms609 closed 5 years ago
0
Use `duplicated` to evaluate splits

#21 ms609 closed 6 years ago
1
Integrate tqDist

#20 ms609 closed 6 years ago
1
Restore missing data from dataset 34

#19 ms609 closed 6 years ago
1