mschubert mad2-transposon issues

mschubert / mad2-transposon

Analysis code for "Cancer tolerance to chromosomal instability is driven by Stat1 inactivation in vivo"

https://www.biorxiv.org/content/10.1101/2021.12.03.471107v2

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cis_analysis: hotnet2 analysis

#20 mschubert opened 5 years ago
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expr_stat1: clean up aneup_cor

#19 mschubert opened 5 years ago
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expr_sets: remove both, manually select highlight

#18 mschubert closed 5 years ago
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Translation and splicing effect

#17 mschubert opened 6 years ago
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Effect of insertions on Eifenif4

#16 mschubert opened 6 years ago
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Translational machinery program of CD4 T-cells <-> B cells in our screen

#15 mschubert opened 6 years ago
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Add MI regulons to gene sets

#14 mschubert closed 6 years ago
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Assign insertions only to 1 gene

#13 mschubert opened 6 years ago
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rollapply local hopping correction

#12 mschubert closed 6 years ago
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GRN enrichment

#11 mschubert closed 6 years ago
1
Annotate WGCNA modules

#10 mschubert opened 6 years ago
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Erg/Ets regulon enrichment

#9 mschubert closed 6 years ago
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Aneuploidy assocs by DNA, RNA?

#8 mschubert opened 6 years ago
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Insertion enrichment per pathway

#7 mschubert closed 6 years ago
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Control poisson rate per sample

#6 mschubert opened 6 years ago
1
Make sure to use correct CIS files for samples

#5 mschubert closed 6 years ago
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Additional checks

#4 mschubert opened 6 years ago
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Group-level CIS by number of transposons vs gene length

#3 mschubert closed 6 years ago
1
RNA-seq fusion quant with transposon inserts

#2 mschubert closed 6 years ago
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Aneuploidy of specific chromosomes needs to be compensated

#1 mschubert opened 6 years ago
0