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msettles
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expHTS
Python application for "Experimental High Throughput Sequencing"
Apache License 2.0
5
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3
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Create dark chocolate
#57
B854414
opened
3 years ago
0
Older-formatted reads with pair information do not produce output fastq files
#56
bricesarver
opened
8 years ago
0
Explicit version checks and application version information
#55
bricesarver
opened
8 years ago
4
Stand-alone PE cleaning does not appear to be working
#54
bricesarver
closed
8 years ago
2
Explicit clarification on folders/naming/etc.
#53
bricesarver
opened
8 years ago
2
Preprocessing_Summary.log is empty when skipping certain steps
#52
bricesarver
opened
8 years ago
3
Develop
#51
dstreett
closed
8 years ago
0
Contaminants confusion
#50
monicabritton
closed
8 years ago
3
Version bump, removal of old files within validate, Matts parser addi…
#49
dstreett
closed
8 years ago
0
Develop
#48
dstreett
closed
8 years ago
0
New develop
#47
dstreett
closed
8 years ago
0
Develop
#46
dstreett
closed
8 years ago
0
Output fastq with invalid lines
#45
monicabritton
opened
8 years ago
1
Do commits so that GitHub copy is updated with installed version.
#44
samhunter
opened
8 years ago
3
Sickle Orphan Single R2 reads should be reverse-complemented
#43
monicabritton
opened
8 years ago
0
More Relevant Error Messages
#42
monicabritton
opened
8 years ago
0
trouble with spades assembly
#41
jrowen86
opened
8 years ago
0
sample sheet parser appears to assume column order
#40
msettles
opened
8 years ago
4
Spades summary stats as in GRC2.0
#39
dstreett
opened
9 years ago
0
Final fastq compression
#38
bricesarver
opened
9 years ago
0
develop_new version does not identify gzipped fastqs
#37
bricesarver
opened
9 years ago
10
Updated spades to output to sample directory
#36
dstreett
closed
9 years ago
0
New develop
#35
dstreett
closed
9 years ago
0
Develop
#34
dstreett
closed
9 years ago
0
checkPreprocessApplications looks for applications not longer needed or exists
#33
msettles
closed
9 years ago
1
not portable to OSX
#32
bricesarver
closed
8 years ago
3
call to spades creates empty directory
#31
atgerritsen
closed
9 years ago
1
Flag to skip deduping
#30
bricesarver
closed
9 years ago
3
02-Cleaned not compatible with Discovar
#29
atgerritsen
closed
8 years ago
0
parameter for pairs to be aligned
#28
dstreett
opened
9 years ago
0
Documentation
#27
dstreett
opened
9 years ago
0
Refactor
#26
dstreett
closed
8 years ago
0
Make sure bwa is taking r1 r2 se
#25
dstreett
closed
9 years ago
0
Single end mapping
#24
dstreett
closed
8 years ago
0
not to dev/null but to error.out for troubleshooting
#23
dstreett
opened
9 years ago
0
Date Version Control
#22
dstreett
closed
8 years ago
0
Spelling Errors
#21
dstreett
closed
8 years ago
1
--forcePairs in mapping
#20
dstreett
closed
9 years ago
0
Develop
#19
dstreett
closed
9 years ago
0
preprocess producing malformed read headers
#18
msettles
closed
9 years ago
1
expHTS preprocess -s option issue
#17
benn0078
closed
9 years ago
1
Develop
#16
dstreett
closed
9 years ago
0
Remove sortbyreadid - add functionality to htseq
#15
dstreett
closed
8 years ago
0
Add --minqual, --type, idattr from configure mapping
#14
dstreett
closed
9 years ago
0
add -R in bwa "@RG. . . ." from grcscript configure mapping
#13
dstreett
closed
8 years ago
0
byreadid add view to -F 0x100
#12
dstreett
closed
8 years ago
0
finalCleanup.py - memory leak
#11
dstreett
closed
9 years ago
0
Develop
#10
dstreett
closed
9 years ago
0
expHTS mapping
#9
dstreett
closed
8 years ago
0
Add Additional Options
#8
dstreett
closed
9 years ago
0
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