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mskcc
/
cmo
Command-line tools for data analysts at the CMO
GNU General Public License v2.0
7
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13
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Minor update
#31
lordzappo
closed
7 years ago
0
Fixes to refalign workflow; add vcf2vcf to setup
#30
ckandoth
closed
7 years ago
2
Added testing for 3 production commands
#29
nikhil
closed
7 years ago
8
Many RNASeq pipline changes, (SUPPA, MISO, JunctionSeq)
#28
alexpenson
closed
7 years ago
10
Minor update
#27
lordzappo
closed
7 years ago
0
cmo fillout maf support
#26
rhshah
closed
7 years ago
2
Minor update, deploy fillout, workflow.py time delay, split_reads gzip tweaks for improved speed
#25
lordzappo
closed
7 years ago
0
Split reads
#24
lordzappo
closed
7 years ago
0
Cmo index
#23
lordzappo
closed
7 years ago
0
Allow user to override some vcf2maf/maf2maf args
#22
ckandoth
closed
7 years ago
4
Facets patch
#21
lordzappo
closed
7 years ago
0
convert philips maf_fillout from wes-filters to run natively within c…
#20
lordzappo
closed
7 years ago
0
Support separate VEP cache/data folders
#19
ckandoth
closed
7 years ago
2
cmo_gdc tool bug in creating log folder
#18
ckandoth
closed
7 years ago
2
example pull request for jenkins testing
#17
lordzappo
closed
7 years ago
1
bwa mem is called twice
#16
hisplan
closed
7 years ago
0
Outdated cmo_resources.json
#15
hisplan
closed
7 years ago
1
Unable to install
#14
hisplan
closed
7 years ago
3
Setuptools warning
#13
hisplan
closed
7 years ago
1
cmo_maf2maf spits out core dumps
#12
kpjonsson
closed
7 years ago
2
Minor fixes needed for maf2maf/vcf2maf wrappers
#11
ckandoth
closed
6 years ago
2
Basic RNASeq pipeline
#10
alexpenson
closed
7 years ago
0
argparse does not allow multicharacter short args that overlap a shorter argument, e.g. "-R" and "-RMQT" conflict
#9
vyellapa
closed
5 years ago
4
Use conda to manage deps
#8
inodb
closed
5 years ago
5
Clone this repo at luna.
#7
jsmedmar
closed
6 years ago
5
StopIteration
#6
marcrobertdemassy
closed
6 years ago
2
ValueError: Could not get next FW id!
#5
jsmedmar
closed
8 years ago
14
changes to cmo_facets and merge
#4
alexpenson
closed
9 years ago
0
maf annotation
#3
alexpenson
closed
9 years ago
0
Review and merge in Ronak's ABRA wrapper
#2
ckandoth
closed
9 years ago
3
Fixed minor but important typo
#1
lemetrec
closed
9 years ago
0
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