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mskcc
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cwl-commandlinetools
Central location for CWL CommandLineTools
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Bump wheel from 0.32.1 to 0.38.1
#103
dependabot[bot]
opened
1 year ago
0
Snpsift
#102
karthigayini
opened
1 year ago
0
Vcf2maf
#101
karthigayini
opened
1 year ago
0
Fix postprocess output
#100
buehlere
closed
2 years ago
0
Athenaathena 1.4.1
#99
carmelinacharalambous
closed
2 years ago
0
Feature/update multiqc 1.12
#98
carmelinacharalambous
closed
2 years ago
0
Feature/multiqc 1.12
#97
carmelinacharalambous
closed
2 years ago
0
Dellytools Update
#96
buehlere
closed
2 years ago
0
Feature/add tabix
#95
karthigayini
opened
2 years ago
0
Feature/vcf2maf update
#94
svural
closed
2 years ago
0
Feature/add octopus
#93
karthigayini
closed
2 years ago
0
Feature/add mosdepth
#92
carmelinacharalambous
closed
2 years ago
0
Feature/vardict
#91
svural
closed
2 years ago
1
Bump pip from 18.1 to 21.1
#90
dependabot[bot]
opened
2 years ago
0
Extend put in dir
#89
murphycj2
closed
3 years ago
0
Bump pip from 18.1 to 19.2
#88
dependabot[bot]
closed
2 years ago
1
put_in_dir can now handle list of list
#87
murphycj2
closed
3 years ago
0
merge msk-access tools
#86
ionox0
closed
3 years ago
2
Ij/fix bwa optional read group info
#85
ionox0
closed
3 years ago
0
Feature/fix collect alignment summary metrics
#84
rhshah
closed
3 years ago
0
Add picard merge bam alignment
#83
murphycj2
closed
3 years ago
0
Adding some GATK picard tools
#82
murphycj2
closed
3 years ago
0
Ij/bwa v0.7.17
#81
ionox0
closed
3 years ago
0
Fix cwlVersion
#80
sivkovic
closed
4 years ago
0
Feature/hsmetrics
#79
ionox0
closed
4 years ago
0
Feature ss/picard collect multiple metric
#78
shalabhsuman
closed
4 years ago
1
add mutect v1.1.5 module
#77
huyu335
closed
3 years ago
0
Update README.md
#76
ionox0
closed
4 years ago
0
Ionox0 unix sort doc fix
#75
ionox0
closed
4 years ago
0
use array as well as single string for bqsr rf
#74
ionox0
closed
4 years ago
0
Updating memory and cores
#73
rhshah
closed
4 years ago
0
Updating trim_galore
#72
rhshah
closed
4 years ago
0
updating abra requirments
#71
rhshah
closed
4 years ago
0
Fixing the cwls for bam collapsing
#70
rhshah
closed
4 years ago
0
Ij/bwa arrg md output changes
#69
ionox0
closed
4 years ago
0
Feature/fix cwls
#68
rhshah
closed
4 years ago
0
Feature/add marianas seprate bams
#67
rhshah
closed
4 years ago
0
Feature/add collect alignment summary
#66
rhshah
closed
4 years ago
0
Release/0.4.0
#65
ionox0
closed
4 years ago
0
Write CWL for GATK4 CollectAlignmentSummaryMetrics
#64
rhshah
closed
4 years ago
3
Write CWL for separating collapsed bam in SIMPLEX, DUPLEX, and UNFILTER
#63
rhshah
closed
4 years ago
2
Roslin integration changes
#62
allanbolipata
closed
4 years ago
1
Create samtools view/sort 1.9 CWLs
#61
allanbolipata
opened
4 years ago
0
Ij/bwa arrg md output changes
#60
ionox0
closed
4 years ago
0
Feature/add pu bwa mem 0.7.12
#59
allanbolipata
closed
4 years ago
0
Release 0.3.0
#58
sivkovic
closed
4 years ago
0
Feature/test modify cwls
#57
rhshah
closed
4 years ago
0
Refinements for MSK-Access CMDline tools
#56
shalabhsuman
closed
4 years ago
0
include readme's and example inputs
#55
ionox0
closed
4 years ago
0
Feature/disambiguate
#54
allanbolipata
closed
4 years ago
0
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