mskcc nf-fastq-plus issues

mskcc / nf-fastq-plus

Generate IGO fastqs, bams, stats and fingerprinting

1 stars 0 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Bump cookiejar from 2.1.2 to 2.1.4 in /dashboard/api

#223 dependabot[bot] opened 1 year ago
0
Bump json5 from 2.2.0 to 2.2.3 in /dashboard/api

#222 dependabot[bot] opened 1 year ago
0
Bump flat and mocha in /dashboard/api

#221 dependabot[bot] opened 1 year ago
0
Bump jsonwebtoken and express-jwt in /dashboard/api

#220 dependabot[bot] opened 1 year ago
0
Bump qs and express in /dashboard/api

#219 dependabot[bot] opened 1 year ago
0
Bump express from 4.16.4 to 4.17.3 in /dashboard/api

#218 dependabot[bot] closed 1 year ago
1
Bump moment from 2.29.1 to 2.29.4 in /dashboard/api

#217 dependabot[bot] opened 2 years ago
0
Bump node-fetch from 2.6.1 to 2.6.7 in /dashboard/api

#216 dependabot[bot] opened 2 years ago
0
Bump moment from 2.29.1 to 2.29.2 in /dashboard/api

#215 dependabot[bot] closed 2 years ago
1
Bump follow-redirects from 1.14.7 to 1.14.8 in /dashboard/api

#214 dependabot[bot] opened 2 years ago
0
Bump follow-redirects from 1.14.4 to 1.14.7 in /dashboard/frontend

#213 dependabot[bot] opened 2 years ago
0
Bump follow-redirects from 1.13.3 to 1.14.7 in /dashboard/api

#212 dependabot[bot] closed 2 years ago
0
Simpler demux part i

#211 dmcmanam closed 3 years ago
0
Remove I7 & 6NT split sample sheets

#210 dmcmanam closed 3 years ago
0
Bump validator from 13.5.2 to 13.7.0 in /dashboard/api

#209 dependabot[bot] opened 3 years ago
0
WGS Samples do not run Mark Duplicates

#208 DavidStreid closed 3 years ago
1
Creating a DRAGEN & bcl2fastq demux for WGS

#207 DavidStreid closed 3 years ago
0
Sending alerts to DATA_QC_ALERTS for missing FASTQ files

#206 DavidStreid closed 3 years ago
0
Set completed run files for ruth and pepe sequencers closes #204

#205 dmcmanam closed 3 years ago
0
Ruth runs may be kicked off before the run is complete

#204 dmcmanam closed 3 years ago
1
Forking PPG Samplesheets to run through DRAGEN

#203 DavidStreid closed 3 years ago
0
Add script that will re-run just a sample

#202 DavidStreid opened 3 years ago
0
Helper Scripts for PPG requests

#201 DavidStreid opened 3 years ago
0
Adding Section: Troubleshooting/Common-Issues

#200 DavidStreid closed 3 years ago
0
Refactor

#199 DavidStreid opened 3 years ago
0
Adding CRISPRESSO

#198 DavidStreid opened 3 years ago
0
Piping to "sort | uniq" to eliminate duplicate params

#197 DavidStreid closed 3 years ago
0
Adding method of updating dashboard view

#196 DavidStreid closed 3 years ago
0
Adding way to update day filter in dashboard

#195 DavidStreid closed 3 years ago
0
Multiome Demux

#194 DavidStreid opened 3 years ago
0
Feature/run param config

#193 darrelln32 closed 3 years ago
0
Feature/run param config

#192 darrelln32 closed 3 years ago
0
Adding back skipping demux step if output folder already present

#191 DavidStreid closed 3 years ago
0
FIX: reference names

#190 DavidStreid opened 3 years ago
0
Demultiplex Thread Balancing (--writing-threads 24)

#189 DavidStreid closed 3 years ago
0
Sometimes Samples stop after MD & Merge

#188 DavidStreid closed 3 years ago
1
Alerting instead of failing on Missing FASTQs

#187 DavidStreid closed 3 years ago
0
TCR SEQ

#186 DavidStreid opened 3 years ago
0
Prepare 10X for BCL2FASTQ

#185 DavidStreid opened 3 years ago
0
Convert RNASeq pipeline to use DRAGEN (STAR aligner instead of bwa)

#184 DavidStreid closed 3 years ago
0
Updating Makefile - includes docker

#183 DavidStreid closed 3 years ago
0
Automating DRAGEN alignment for WGS

#182 DavidStreid closed 3 years ago
0
Refactoring generate_run_params_wkflw

#181 DavidStreid opened 3 years ago
0
Removing RUN_PARAMS_FILE passing

#180 DavidStreid closed 3 years ago
0
SingleCellCNV should not run Mark Duplicates

#179 DavidStreid opened 3 years ago
0
HemePACT_v4_BAITS: b37 -> b38

#178 DavidStreid closed 3 years ago
0
Adding UPLOAD_DONE gate

#177 DavidStreid closed 3 years ago
0
Adding back dgn_ss_split

#176 DavidStreid opened 3 years ago
0
RUN_TAG=RUNNAME_PROJECT_TAG_SAMPLE_TAG_GTAG_RECIPE

#175 DavidStreid closed 3 years ago
0
demux errorStrategy: 'terminate' => 'ignore'

#174 DavidStreid closed 3 years ago
0