add more columns to cBio utils module

mskcc / pluto-cwl

CWL workflows for helix filter scripts

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Closed stevekm closed 3 years ago

stevekm commented 3 years ago

A lot of scripts are breaking because of unknown columns in tables that need cBio headers. Need to add more known headers, such as;

PIPELINE_NAME

will list more as I find them

stevekm commented 3 years ago

consider adding some method in the module to use placeholder column labels for unrecognized columns

stevekm commented 3 years ago

This is fixed; implemented methods so that any unknown columns are filled in with their own label for cBio headers.